AT3G19330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF677) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19250.1); Has 131 Blast hits to 131 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6699423..6700772 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43011.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNCLSFNPA SPEASLGDDP LPHPSLESGV ASTSRNDASI SSPTFNLSRE LAHAFQTPSY HDVRSRVHVV VDLTQIHHRL IQPDIELLLS QVLQPNKECV 101: QEAIRHVKQT TLTNLVSTYF QHSEDATRLC LNLYQNVHSA RHHLYTPLLD LFNIFPGDSL PAIDESLCDL AFDVFLKLDT FENPFSSPES YSFRDTQLCF 201: SQLKHNLDRR LRKSRSRVRL IHHATAGSSL CLVAAVVAVA ASAVVIASHA LPILLVVAGP LCSPYLPHSF KRKELTNICQ LNAASKGTFV LNKDLDTIDR 301: LVSRLHTGIE YDKFLIRLGL ERGRDVHSIQ EILKLLRKSH LPLTHQLKDL EDHICLWFTN VNKARSLLLT EIHLPRPSHV IL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)