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AT1G65470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chromatin assembly factor-1 (FASCIATA1) (FAS1)
Curator
Summary (TAIR10)
Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.
Computational
Description (TAIR10)
FASCIATA 1 (FAS1); CONTAINS InterPro DOMAIN/s: Chromatin assembly factor 1 subunit A (InterPro:IPR022043); Has 59418 Blast hits to 36461 proteins in 1994 species: Archae - 284; Bacteria - 7518; Metazoa - 24571; Fungi - 4236; Plants - 1982; Viruses - 348; Other Eukaryotes - 20479 (source: NCBI BLink).
Protein Annotations
BioGrid:28079eggNOG:ENOG410ISTReggNOG:ENOG4111QVPEMBL:AB027229
EMBL:AC001229EMBL:AC004512EMBL:AY126994EMBL:CP002684
EnsemblPlants:AT1G65470EnsemblPlants:AT1G65470.1entrez:842858ExpressionAtlas:Q9SXY0
GeneID:842858Genevisible:Q9SXY0GO:GO:0000724GO:GO:0005634
GO:GO:0006260GO:GO:0006310GO:GO:0006325GO:GO:0006334
GO:GO:0006351GO:GO:0006355GO:GO:0008283GO:GO:0009555
GO:GO:0009934GO:GO:0010026GO:GO:0031507GO:GO:0033186
GO:GO:0042393GO:GO:0045787GO:GO:0048366hmmpanther:PTHR15272
hmmpanther:PTHR15272:SF0HOGENOM:HOG000082754InParanoid:Q9SXY0InterPro:IPR022043
ncoils:CoilOMA:SDSMAIDPANTHER:PTHR15272PaxDb:Q9SXY0
Pfam:PF12253Pfam:Q9SXY0PhylomeDB:Q9SXY0PIR:E96679
PIR:F96679PIR:T02369PRIDE:Q9SXY0PRO:PR:Q9SXY0
ProteinModelPortal:Q9SXY0Proteomes:UP000006548RefSeq:NP_176725.1STRING:3702.AT1G65470.1
TAIR:AT1G65470tair10-symbols:FAS1tair10-symbols:NFB2UniGene:At.20487
UniProt:Q9SXY0
Coordinates (TAIR10) chr1:-:24319906..24323879
Molecular Weight (calculated) 93352.40 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.91
Length 815 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEVSTVNEN ENRKTMIEPK KLNKRKREPT AIENLTSEEK ESQISSLNLE MKGLFDYFRE VMDKSKRTDL FSGFSECSSL NSMVALLMEE MSLPLSKLVD
101: EIYLKLKEKT ESVTMVAVKS AVVSVGQRVS YGVLNVDADV LEDDSESCLW CWETRDLKIM PSSVRGVLKL RRTCRKKIHE RITAVSAMLA ALQREETEKL
201: WRSDLSKAAE KLGKILSEVD IRSFMDNMMQ KNSSEMAEKD SKREEKLLLK QLEKNRCEAE KEKKRMERQV LKEKLQQEKE QKLLQKAIVD ENNKEKEETE
301: SRKRIKKQQD ESEKEQKRRE KEQAELKKQL QVQKQASIME RFLKKSKDSS LTQPKLPSSE VTAQELSCTK HENEIGKVVQ AIDNAFSTTC EATVDDIRRE
401: HFASWRQLGH LLSSSKKHWG MRRQPKSELF PKLKLSTNSG VTSDGEPNME KQGDGCEENN FDGRQCKPSS SNRKKSRRVK QLLQFDKSCR PGFYGIWPSQ
501: SQVVKPRRPL QKDPELDYEV DSDEEWEEEE AGESLSDCEK DEDESLEEGC SKADDEDDSE DDFMVPDGYL SEDEGVQVDR MDIDPSEQDA NTTSSKQDQE
601: SPEFCALLQQ QKHLQNLTDH ALKKTQPLII CNLTHEKVSL LAAKDLEGTQ KVEQICLRAL MVRQFPWSSL IEISINDIQD EDQEASKFSC SQSTPPSNSK
701: AKIIPDSDLL TVVSTIQSCS QGINRVVETL QQKFPDVPKT KLRQKVREIS DFEDSRWQVK KEVLTKLGLS PSPDKGGKRL PKTISTFFSK RCLPPSTKPQ
801: PAVEDAAERL ENENA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)