AT5G38690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc-finger domain of monoamine-oxidase A repressor R1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc-finger domain of monoamine-oxidase A repressor R1 protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 protein (TAIR:AT1G67270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15479424..15482992 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64430.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVVSKNQTQ QQTPNPGGGV SRIEDSTNGK TCHQCRQKRT DLVGSCVTKK KDKTCPIKLC TKCILNRYGE NAQEVALKKD WICPKCRGNC NCSYCMKKRG 101: QKPTGILVHT AKKTGFSSVS ELLKTSGSDK YFYTKKVKPE GVVVVSPLKL DQENSIEQKH VSIKKSRKTK REELKDINNG CSNENVVVKK SNPKKIKLSD 201: SVHATTEVIK KVLAEGKKKK TTAKGIKENN VAEKIKRIKP ALKKKEEDQV EIKIPQGNIS ITVSGIDLAP EDAGNVFQFL EFCSAFGKAL DLRKGQAECV 301: IREMLSGRSK RRQQYSTLTQ MIIQLLTVIL EDRGETSVCL SATDPSWFTT IGECLSESEV KLDDFPPEMF EKGISQYEKL NSSKRLKLLN FLCDETLGTL 401: VMRNCIDSQN IESVERKKEA KEKINAAKDK EKQLKQKLQD ELAQAVKAKN GIPLLITEHD AIVSRINAET QEVYSEMQNA IDMLSKKSQG SDDAVRTNPV 501: ELDDNGLIFW RLKSYNDEQN ILLQDLGSWN EVCPHEKWFS FSSEQKPEIE KYISFIRMKR VQAQKNASTI IT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)