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AT5G63550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23851315 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEK domain-containing chromatin associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEK domain-containing chromatin associated protein; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK domain-containing chromatin associated protein (TAIR:AT3G48710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTJAeggNOG:KOG2266EMBL:BT004149EMBL:BT005478
EMBL:CP002688EnsemblPlants:AT5G63550EnsemblPlants:AT5G63550.1entrez:836474
ExpressionAtlas:Q84JB7Gene3D:1.10.10.60GeneID:836474GO:GO:0003677
Gramene:AT5G63550.1hmmpanther:PTHR13468hmmpanther:PTHR13468:SF6HOGENOM:HOG000082784
InterPro:IPR009057InterPro:IPR014876ncoils:CoilPfam:PF08766
PhylomeDB:Q84JB7Proteomes:UP000006548RefSeq:NP_201160.2SMR:Q84JB7
STRING:3702.AT5G63550.2SUPFAM:0042580TAIR:AT5G63550UniGene:At.28992
UniProt:Q84JB7
Coordinates (TAIR10) chr5:+:25444805..25447934
Molecular Weight (calculated) 59430.50 Da
IEP (calculated) 4.83
GRAVY (calculated) -1.45
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MATETLDEKT PEVNSPAKEE IDVVPKEEKE VEKEKVDSPR IGEAEEEKKE DEEEGEAKEG ELGEKDKEDD VESEEEEEEE EGSGSKKSSE KETVTPTSER
101: PTRERKKVER FSLSTPMRAP PSKSVSIEKG RGTPLREIPN VAHKLSKRKA DDNLMLLHTI LFGKKAKAQM VKRNIGQFSG FAWSEKEEEK QRARIKEKID
201: KCVKEKLIVF CDVLDIPISR SNVKKEELAV KVLEFLESPK ETRDVIIADQ EKAKKRKSTP KRGKSGESSD TPAKRKRQTK KRDLPSDTEE GKDEGDADSE
301: GTNDPHEEDD AAPEEESDHE KTDTDDEKDE VEVEKPSKKK SSSKKTVEES SGSKGKDKQP SAKGSARSGE KSSKQIAKST SSPAKKQKVD HVESSKEKSK
401: KQPSKPQAKG SKEKGKATKK GKAKAEPTRK EMLEVVSKIL KEVDFNTATL SDILQKLSDH FGVELSHRKP EVKDVITEAI NAMTDDEEED EEEEAEAGSD
501: KEKEEVKGEE EEEKAEAESD KEKEKEEPKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)