AT1G78650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-directed DNA polymerases | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to DNA polymerase delta (POLD3), which in other organism was shown to be involved in the elongation of DNA replication. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
POLD3; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA strand elongation involved in DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase subunit Cdc27 (InterPro:IPR019038); Has 2595 Blast hits to 2034 proteins in 330 species: Archae - 0; Bacteria - 228; Metazoa - 1072; Fungi - 424; Plants - 126; Viruses - 27; Other Eukaryotes - 718 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29582987..29585508 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55545.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 509 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTHTETLNLL DEIESFVSDQ LQVVSYKWLS RNFSLSSNTA KRLLKDFVEK HGKGLEVVYI VSGLLKNGPS DYHARLASST ELPEVEKEFN GKYSVHIYSV 101: QASIPMDPAA IWNTEFVQAE ELFRQPSATD NCLKGNRFCG VSNSCVKRNI EGATENVTAP RTESVRTTGQ SKSSSNFQKS TVPSNQGKNF QHSSSNVGHQ 201: AKSESIAAPA KNQSAKSSLD KEKAFHVPAN KKNGQGEKSV TGTGGLLKNM WGRVPVKTED DSPTVDVKNH ITNHSEPQKP SHDADKKGGS DDETRDANFM 301: RAPKDNRKRK VIFDFSDDEY EDVISLASPS SPKVNSRPDV ELSSEDSGPE KPDADVSPEI KSEEPEASKE DRQNTASVDA STTLSTEKIQ AIGSEAEVNP 401: SKRRTTAVPS SPKRKKVLKS RIDDRGREVT EVVWEETETN AKKKEDTNTS KKLDDGKTAN AVNRAVAQKK SPAIGNTAAT NAGGKAGSKK GGNVKDPKQG 501: NIMSFFKKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)