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AT3G56870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 204 Blast hits to 201 proteins in 58 species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY5GeggNOG:ENOG410Y762EMBL:AY735621EMBL:CP002686
EnsemblPlants:AT3G56870EnsemblPlants:AT3G56870.1entrez:824854GeneID:824854
Gramene:AT3G56870.1hmmpanther:PTHR34461hmmpanther:PTHR34461:SF1KEGG:ath:AT3G56870
ncoils:CoilOMA:ERDCNRFProteomes:UP000006548RefSeq:NP_191246.2
STRING:3702.AT3G56870.1TAIR:AT3G56870UniGene:At.51005UniProt:Q5XVA1
Coordinates (TAIR10) chr3:+:21053077..21055518
Molecular Weight (calculated) 79625.30 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.79
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MVELRSSTHL NSHVHYIRTI KDGSIKIVMN MDGRRKPKLK FRQLVDIYNL EDSQGVESIP RVVRDLDNGS DFTQGSESED FSMTTLEMIQ KQCKERKRKL
101: RNCRDTTTET FSNVEVKKEY VTQDEGCDIE EPLSSWDTKF SKRRKKKQER KKAKCGTSTS SPPSVEKVDL PLVLFHVKPE VWDDSYSVSE AMDCSEKSES
201: PINTVLVEEI MLDSSSDMRL VPYCSAEPNF PGVVAIEEAF EDASEEFSDA DFQNKQIVLY SSVSREEMEL DVNPQHSEYE NIGCVKNFIS AYTSSGCEEE
301: DKEDEESNDI KANLDMSVTG LEIVKIEAPE ILAIDYPGCL SIINFCAEDS EIVWETEDIT KDNFPEATDI LQLTNCCNSL DNLQPVPEDS TSSKEEDHLT
401: ERLQQSLYSK HEDEAGDHKL SQLYKEPDEV QKVAETDSIQ QQQPHHQPEN LLSGRKALSP TSQEKLRKAM EHPDSPEKRS KKSRGKLYFS SQNSHRILKA
501: QGLDNIDRVE IIPSSKQAIQ KATNNTRQMK YQRATHKFPR RNTQAAKAQP FSTGGTSIQG CSQKAIAFSQ GQMRDFQNVA ARLTKELKSM RQITKRCLQA
601: ESNTSNMSDC NLDEVKTVIG NAEKTEESCK KWLSIIERDC NRFCKLMSMV REDSPATENI VHKKKKIRFA DDAGGDLCHV KVFEIDLESE SYVITKDCKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)