AT3G21480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : BRCT domain-containing DNA repair protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BRCT domain-containing DNA repair protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT4G03130.1); Has 730 Blast hits to 680 proteins in 204 species: Archae - 4; Bacteria - 146; Metazoa - 309; Fungi - 49; Plants - 100; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:7567730..7571990 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115956.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.58 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||
| Length | 1041 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAKSNQNFSP YEETQPIDSN PPSSSDSGED KDSLLGDCDT QPVDDNALIN DQYMETQVMD TECDNEEFLL CNETQAVDLG FETGEEVLVE GKQLLEASDG 0101: LATQVLDLCD DEVVVDSDDD VTDVLEGNSD LSDSDDSGSK AETVLSSEEN RQDANEKVKS AVVFDAWSNE HGVSGKKVAR FASVRSAAFR ASAVAARVAN 0201: QKSANTDCST LINCHSSGKG TTHNSGLENS VGEVGNQQSL TSLFVEEKKD LRTGKKTARK LFVEDFPEEK FHSTDCNVDL GNLSYIGSQE PGEESQASAL 0301: NLVDKLISEC RLEFDFEVQA DYGRKTEDKS KFVQIFKGPQ ELAKKVSYKS GAVGNNIFDW DDNREDEGGG DIYRRRKDEF FGVASKRREF SSLPREQKRE 0401: LIPVAVDKRW ARSDSKLLKH SVTRSRKNIQ GAKKNLGKEL DEVREAAVLG NDTQVAAEAI DDLCSGDRGK FDGEASCLTG KKLSPEEERG FSPGGVVTRQ 0501: SKGTKRIQAM SKDELLKKRM KKASPSPAKA CRTNIEGSSN GDQLNKEGPC CWKSRKVQTA SRETKKNLVD EFDEVSQESN TEMFDRHEEA EAGPDTQMAA 0601: EVMNALHSGD GREIDPEPNN LIGKKLLLEG GISRCGVVTR KSKRIKGIQA VDNDVESLKP KNKKARSILA KSFEKNMDRY SKNDKVDTPD EAVASTTEKR 0701: QGELSNKHCM SKLLKQSHRG EAEVLNYPKR RRSARISQDQ VNEAGRSSDP AFDTPAKSKT PSTNVSPICM GDEYHRLSCK DSFTSHTTRE FRSLTVPVAE 0801: PISETKSTRK RRDLGSICVL FSQHLDEDVT KHQKKILARF DISEASSMKE ATHFIADNFT RTRNMLEAIA SGKPVVTTQW LESIDQVNIY VDEDMYILRD 0901: SKKEKEFCFN MGVSLARARQ FPLLQGRRVF ITPNTKPALN TITTLVKAVH GLPVERLGRS SLSEDKVPEN LLVLSCEEDR AICIPFLERG AEVYSSELLL 1001: NGIVTQRLEY ERYRLFTDHV RRTRSTIWIK DGKGKFQRRS G |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)