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AT5G46740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 21
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 21 (UBP21); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 20 (TAIR:AT4G17895.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G46740-MONOMEREC:3.4.19.12eggNOG:ENOG410XQ92eggNOG:KOG1865
EMBL:AB016882EMBL:AF302669EMBL:CP002688EnsemblPlants:AT5G46740
EnsemblPlants:AT5G46740.1entrez:834717GeneID:834717Genevisible:Q9FIQ1
GO:GO:0006511GO:GO:0016579GO:GO:0036459Gramene:AT5G46740.1
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF524HOGENOM:HOG000154757InParanoid:Q9FIQ1
InterPro:IPR001394InterPro:IPR018200InterPro:IPR028889iPTMnet:Q9FIQ1
KEGG:ath:AT5G46740KO:K11855MEROPS:C19.A15OMA:SPIRQIQ
PaxDb:Q9FIQ1Pfam:PF00443Pfam:Q9FIQ1Pfscan:PS50235
PhylomeDB:Q9FIQ1PRIDE:Q9FIQ1PRO:PR:Q9FIQ1PROSITE:PS00972
PROSITE:PS00973PROSITE:PS50235ProteinModelPortal:Q9FIQ1Proteomes:UP000006548
RefSeq:NP_568667.1scanprosite:PS00972scanprosite:PS00973SMR:Q9FIQ1
STRING:3702.AT5G46740.1SUPFAM:SSF54001TAIR:AT5G46740tair10-symbols:UBP21
UniGene:At.7737UniProt:Q9FIQ1
Coordinates (TAIR10) chr5:-:18965410..18968492
Molecular Weight (calculated) 82421.20 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.70
Length 732 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEFSDPPPS NLSSSHKLTK PNQTLDESSP TAPIRDLVTN SLSLSSPIRQ IQALSPAKPD GSSSSPPDKT LNFNPEENRD VNPDESSSSP SDKTLIAPPA
101: QISPVSNNNH LRITNTSDSY LYRPPRRYIE YESDDDELNK MEPTKPLQLS WWYPRIEPTG VGAGLYNSGN TCFIASVLQC FTHTVPLIDS LRSFMYGNPC
201: NCGNEKFCVM QALRDHIELA LRSSGYGINI DRFRDNLTYF SSDFMINHQE DAHEFLQSFL DKLERCCLDP KNQLGSVSSQ DLNIVDNVFG GGLMSTLCCC
301: NCNSVSNTFE PSLGWSLEIE DVNTLWKALE SFTCVEKLED QLTCDNCKEK VTKEKQLRFD KLPPVATFHL KRFTNDGVTM EKIFDHIEFP LELDLSPFMS
401: SNHDPEVSTR YHLYAFVEHI GIRATFGHYS SYVRSAPETW HNFDDSKVTR ISEERVLSRP AYILFYAREG TPWFSSTFEQ LKTVFEATPL HFSPVSVLDN
501: SYESVDNSSK ACNDSVGVSI PDVKWPDSCC QEPKEEVFHS AESSNNEDSS AMIDALGSPQ SEKPFAETSQ QTEPESCPTE NKAYIDKSEK PFAETSQPKE
601: PKPFADRASI DAPLLKVQNQ DISPKRKAGE RATLGGPKLK YQKPNSHQKR QGTFQIQRAH LQTKKQEESR KTKRPLFRSN VAASAPDPKY KNHALSYLNR
701: AQTPRARKLA NALSDSPTKK KKSSNMRRSI KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)