suba logo
AT1G07480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor IIA, alpha/beta subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07470.1); Has 733 Blast hits to 623 proteins in 191 species: Archae - 0; Bacteria - 29; Metazoa - 394; Fungi - 169; Plants - 77; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPCFeggNOG:ENOG4111M8KEMBL:AB493439EMBL:AJ223635
EMBL:AK316911EMBL:AY463627EMBL:CP002684EnsemblPlants:AT1G07480
EnsemblPlants:AT1G07480.1EnsemblPlants:AT1G07480.2entrez:837262Gene3D:1.10.287.100
Gene3D:2.30.18.10GeneID:837262GO:GO:0005672GO:GO:0006367
Gramene:AT1G07480.1Gramene:AT1G07480.2hmmpanther:PTHR12694hmmpanther:PTHR12694:SF8
HOGENOM:HOG000241323InterPro:IPR004855InterPro:IPR009083InterPro:IPR009088
InterPro:IPR013028KEGG:ath:AT1G07480KO:K03122OMA:RDDSSGH
PANTHER:PTHR12694Pfam:PF03153PhylomeDB:O49349PIR:T51333
Proteomes:UP000006548Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042RefSeq:NP_172228.3RefSeq:NP_850937.1
SMART:SM01371SMR:O49349STRING:3702.AT1G07480.1SUPFAM:SSF47396
SUPFAM:SSF50784TAIR:AT1G07480UniGene:At.20059UniGene:At.48163
UniGene:At.72731UniProt:O49349
Coordinates (TAIR10) chr1:-:2296706..2299215
Molecular Weight (calculated) 41296.40 Da
IEP (calculated) 4.01
GRAVY (calculated) -0.78
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTTTTTSAV YIHVIEDVVN KVREEFINNG GPGESVLSEL QGIWETKMMQ AGVLNGPIER SSAQKPTPGG PLTHDLNVPY EGTEEYETPT AEMLFPPTPL
101: QTPLPTPLPG TADNSSMYNI PTGSSDYPTP GTENGVNIDV KARPSPYMPP PSPWTNPRLD VNVAYVDGRD EPERGNSNQQ FTQDLFVPSS GKRKRDDSSG
201: HYQNGGSIPQ QDGAGDAIPE ANFECDAFRI TSIGDRKVPR DFFSSSSKIP QVDGPMPDPY DEMLSTPNIY SYQGPSEEFN EARTPAPNEI QTSTPVAVQN
301: DIIEDDEELL NEDDDDDELD DLESGEDMNT QHLVLAQFDK VTRTKSRWKC SLKDGIMHIN DKDILFNKAA GEFDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)