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AT1G07470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor IIA, alpha/beta subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor IIA, alpha/beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: Transcription factor IIA, alpha/beta subunit (TAIR:AT1G07480.2); Has 705 Blast hits to 589 proteins in 189 species: Archae - 0; Bacteria - 16; Metazoa - 386; Fungi - 167; Plants - 79; Viruses - 7; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPCFeggNOG:ENOG4111M8KEMBL:AF424559EMBL:AY039987
EMBL:AY049254EMBL:AY085902EMBL:AY133802EMBL:AY463597
EMBL:CP002684EnsemblPlants:AT1G07470EnsemblPlants:AT1G07470.1entrez:837259
Gene3D:1.10.287.100Gene3D:2.30.18.10GeneID:837259GO:GO:0005672
GO:GO:0006367Gramene:AT1G07470.1hmmpanther:PTHR12694hmmpanther:PTHR12694:SF8
HOGENOM:HOG000241323InterPro:IPR004855InterPro:IPR009083InterPro:IPR009088
InterPro:IPR013028KEGG:ath:AT1G07470KO:K03122OMA:TNANIEI
PANTHER:PTHR12694Pfam:PF03153PhylomeDB:Q93VP4Proteomes:UP000006548
Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042RefSeq:NP_563790.1SMART:SM01371SMR:Q93VP4
STRING:3702.AT1G07470.1SUPFAM:SSF47396SUPFAM:SSF50784TAIR:AT1G07470
UniGene:At.20059UniGene:At.48163UniGene:At.67184UniGene:At.75320
UniProt:Q93VP4
Coordinates (TAIR10) chr1:+:2291723..2294350
Molecular Weight (calculated) 41266.50 Da
IEP (calculated) 4.03
GRAVY (calculated) -0.76
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTTTTTSAV YIHVIEDVVN KVREEFINNG GPGESVLSEL QGIWETKMMQ AGVLNGPIER SSAQKPTPGG PLTHDLNVPY EGTEEYETPT AEMLFPPTPL
101: QTPLPTPLPG TADNSSMYNI PTGSSDYPTP GTENGVNIDV KARPSPYMPP PSPWTNPRLD VNVAYVDGRD EPERGNSNQQ FTQDLFVPSS GKRKRDDSSA
201: HYQNGGSIPQ QDGASDAIPE ANFECAALRI TYVGDRKIPR DLIGSSSKIP QVDGPMPDPY DEMLSTPNIY SYQGPNEEFN EARTPAPNEI QTSTPVAVPN
301: DIIEDDEELL NEDDDDDELD DLESGEDMNT QHLVLAQFDK VTRTKSRWKC SLKDGIMHIN DKDILFNKAT GEFDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)