AT5G12120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-associated/translation elongation factor EF1B protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-associated/translation elongation factor EF1B protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated/translation elongation factor EF1B protein (TAIR:AT2G26920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3916229..3918088 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67888.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.40 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||
| Length | 619 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSASKMKSR DKKVMNDSQK TPSKASGSMG GSSVVVGGYN PLLGTFQTIE SLSATGSSSL HNNGRFRHID ESDSTGADCD SVSNNGSWSG ESEDHKEKVP 101: STSIAAKQEI IPGADNDKRD KMRLKNERKH QRQKEKRAQE LHERCCQYLM SRKLEVHAQL IISMGIPHER ATYALMLNEG KIEESINWLF DDGGAKVADK 201: KLDPTSGNLK LDISQELGRI LELETKYKCT KQDVERAVVT AEGDIEKAEE ALRRQKQDQS TASRKPEDIS DSTSVNNSKV PSVLTSQNTV GQLQPNSGMY 301: PAGREEALDR KNLGYPRGSS YISGESENQS VNSLERIHMK LQWMKLQQNA PLEENKRIPY QQTPLSRSTE ETHYVTALGD QFKRLQQQDM REPVMVMQQQ 401: QQQQQRSQSA NTNVLPVSTM NASFTGAAAA GSGWHPANRS EAAQSNGYLP SRSLPPNDLN SNLMYQQLQY QQYQGQVNNN GHRMAGSSAP PAVAPAASLG 501: LFSGFGSLAG SSSSGLDWNT DGSLGHLDYN NIDWSLDKGL ACVRPSQQYV AASSPYSAAS SPYEAHMNGR TRMMTNGNGM GVAMGVQEAA LVGNGREWTS 601: PFEGKDLFSL SRQYVPPSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)