AT1G15940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 113244 Blast hits to 64070 proteins in 2877 species: Archae - 468; Bacteria - 17745; Metazoa - 45816; Fungi - 13599; Plants - 5330; Viruses - 622; Other Eukaryotes - 29664 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5473672..5478050 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109600.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||
| Length | 990 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGPLVEATEF SKEQALTDAA ENLLKPHFST DATLSLLEVM ESLLATVEQD LSSSVQKALH PPMRALVSAD LLRNPDSDVR VSVVSCLTEI MRITAPEAPY 101: NDEQMKDIFQ VTIEAFEKLA DASSRSYRKA EVILETVAKV RSSLVMLDLE CDDLVLEMFQ RFLKIIRPDH PQLVLVSMET IMITVIDESE EVPMDLLEIL 201: LTTVKKDSQD VSPAALTLVE KVLSSCTCKL QPCIMEALKS SGTSLDMYSP VVSSICQSEF ATTQAHNDVK PKDNEADEKI SEGQVVPSDS LEDKLNLGLS 301: RKGTRSKRSA RGGTRRANGD EKVITANEGL SESTDAETAS GSTRKRGWKP KSLMNPEEGY SFKTSSSKKV QEKELGDSSL GKVAAKKVPL PSKVGQTNQS 401: VVISLSSSGR ARTGSRKRSR TKMEETDHDV SSVATQPAKK QTVKKTNPAK EDLTKSNVKK HEDGIKTGKS SKKEKADNGL AKTSAKKPLA ETMMVKPSGK 501: KLVHSDAKKK NSEGASMDTP IPQSSKSKKK DSRATTPATK KSEQAPKSHP KMKRIAGEEV ESNTNELGEE LVGKRVNVWW PLDKKFYEGV IKSYCRVKKM 601: HQVTYSDGDV EELNLKKERF KIIEDKSSAS EDKEDDLLES TPLSAFIQRE KSKKRKIVSK NVEPSSSPEV RSSMQTMKKK DSVTDSIKQT KRTKGALKAV 701: SNEPESTTGK NLKSLKKLNG EPDKTRGRTG KKQKVTQAMH RKIEKDCDEQ EDLETKDEED SLKLGKESDA EPDRMEDHQE LPENHNVETK TDGEEQEAAK 801: EPTAESKTNG EEPNAEPETD GKEHKSLKEP NAEPKSDGEE QEAAKEPNAE LKTDGENQEA AKELTAERKT DEEEHKVADE VEQKSQKETN VEPEAEGEEQ 901: KSVEEPNAEP KTKVEEKESA KEQTADTKLI EKEDMSKTKG EEIDKETYSS IPETGKVGNE AEEDDQRVIK ELEEESDKAE VSTTVLEVDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)