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AT1G13220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear matrix constituent protein-related
Curator
Summary (TAIR10)
Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.
Computational
Description (TAIR10)
LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1); Has 107806 Blast hits to 52972 proteins in 2654 species: Archae - 1404; Bacteria - 16181; Metazoa - 50751; Fungi - 7829; Plants - 5203; Viruses - 291; Other Eukaryotes - 26147 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ15eggNOG:ENOG4111KVIEMBL:AC007357EMBL:AK228666
EMBL:AY045658EMBL:BT000576EMBL:CP002684EnsemblPlants:AT1G13220
EnsemblPlants:AT1G13220.1EnsemblPlants:AT1G13220.2entrez:837882ExpressionAtlas:Q9SAF6
GeneID:837882Genevisible:Q9SAF6GO:GO:0005652GO:GO:0005654
GO:GO:0005737GO:GO:0006997GO:GO:0031965GO:GO:0034399
GO:GO:0097298hmmpanther:PTHR31908hmmpanther:PTHR31908:SF4HOGENOM:HOG000239398
iPTMnet:Q9SAF6KEGG:ath:AT1G13220ncoils:CoilOMA:HNDISEL
PaxDb:Q9SAF6PhylomeDB:Q9SAF6PIR:G86266PRO:PR:Q9SAF6
ProteinModelPortal:Q9SAF6Proteomes:UP000006548RefSeq:NP_563923.1RefSeq:NP_563924.1
STRING:3702.AT1G13220.2SUPFAM:SSF57997TAIR:AT1G13220tair10-symbols:LINC2
UniGene:At.11265UniProt:F4HP35
Coordinates (TAIR10) chr1:+:4515660..4517415
Molecular Weight (calculated) 45368.00 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.94
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MFTPQRKQWM SPAMTPRSET HKIGGVTNPR NADRKGKAVA FSDDLVIPTL PPPPIGTLTG QGVSRGHTDD MDMGDWRRFR EVGLLNEASM EKKDQEALLE
101: KISTLEKELY GYQHNMGLLL MENKELVSKH EQLNQAFQEA QEILKREQSS HLYALTTVEQ REENLRKALG LEKQCVQELE KALREIQEEN SKIRLSSEAK
201: LVEANALVAS VNGRSSDVEN KIYSAESKLA EATRKSSELK LRLKEVETRE SVLQQERLSF TKERESYEGT FQKQREYLNE WEKKLQGKEE SITEQKRNLN
301: QREEKVNEIE KKLKLKEKEL EEWNRKVDLS MSKSKETEED ITKRLEELTT KEKEAHTLQI TLLAKENELR AFEEKLIARE GVILGYSFCR L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)