AT3G08020.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : PHD finger family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G52100.1); Has 2616 Blast hits to 2466 proteins in 178 species: Archae - 0; Bacteria - 13; Metazoa - 2009; Fungi - 82; Plants - 239; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:2557753..2561534 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86276.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.80 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||
| Length | 779 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFHVACPIT CRRICHCSLG FSRDLRGANA KHKFLKEVIR VEEFLKDPAV SSNVFIGGTV QVRVPKVVPA PQTVSILGVG DGAIGSGVDE LAEEASAQKK 101: RVALQRQAAV TVEAAEDYAR RFESGVNDLT SNDHAGEELG HSGMNIMCRM CFLGEGEGSD RARRMLSCKD CGKKYHKNCL KSWAQHRDLF HWSSWSCPSC 201: RVCEVCRRTG DPNKFMFCKR CDAAYHCYCQ HPPHKNVSSG PYLCPKHTRC HSCDSTVPGN GLSVRWFLSY TCCDACGRLF VKGNYCPVCL KVYRDSESTP 301: MVCCDICQRW VHCHCDGISD DKYMQFQVDG KLQYKCATCR GECYQVKDLQ DAVQELWKKK DVVDKELIAS LRAAAGLPTE EEIFSIFPFS DDEENGPVSG 401: RSLKFSIKGL VEKSPKKSKE YGKHSSSKKH ASKKGSHTKL EPEVHQEIGS ERRRLGGVRI DNVGFQINEQ SDVNSSVAGI CSTHEPKIVK HKRVDDVMVT 501: DEEKPSRIVR IKCSKPHDSD SEDTLRNAGE EKSVKAKKLV INLGARKINV SGSSKSNVVS HLSRDKDQST LGGDKVDQTG EVRTLKISGR FGKTQSEGSK 601: ATFGSVTQFP AASTSEGNHV DDKTSISPAL QKEARPLLKF KLRKPNSGDQ TSSVTTQSED EKLSSAKGQR SKRKRPSSLV DMASLKEDGE ATTHSHQDNS 701: RNDEMMDANW ILKKLGKDSI GKRVEVHGSQ NSWRKGTVTD VSGDTSTLSV SLDDGSIKTF ELGKHSVRFI PQKQKRSRS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)