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AT5G16180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ortholog of maize chloroplast splicing factor CRS1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ortholog of maize chloroplast splicing factor CRS1 (CRS1); FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT3G18390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IR2VeggNOG:ENOG410YC4WEMBL:AL391148EMBL:CP002688
EnsemblPlants:AT5G16180EnsemblPlants:AT5G16180.1entrez:831476Gene3D:3.30.110.60
GeneID:831476Genevisible:Q9LF10GO:GO:0000373GO:GO:0003723
GO:GO:0006397GO:GO:0006417GO:GO:0009570GO:GO:0030529
Gramene:AT5G16180.1hmmpanther:PTHR31846hmmpanther:PTHR31846:SF10HOGENOM:HOG000241574
InParanoid:Q9LF10InterPro:IPR001890KEGG:ath:AT5G16180ncoils:Coil
OMA:ERESQVHPaxDb:Q9LF10Pfam:PF01985Pfam:Q9LF10
Pfscan:PS51295PIR:T51488PRIDE:Q9LF10PRO:PR:Q9LF10
PROSITE:PS51295ProteinModelPortal:Q9LF10Proteomes:UP000006548RefSeq:NP_197122.2
SMART:SM01103SMR:Q9LF10STRING:3702.AT5G16180.1SUPFAM:SSF75471
TAIR:AT5G16180tair10-symbols:ATCRS1tair10-symbols:CRS1UniGene:At.50459
UniGene:At.54863UniProt:Q9LF10
Coordinates (TAIR10) chr5:+:5279884..5282898
Molecular Weight (calculated) 83595.60 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.53
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)