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AT5G13950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ0PeggNOG:ENOG410XU84EMBL:CP002688EnsemblPlants:AT5G13950
EnsemblPlants:AT5G13950.1EnsemblPlants:AT5G13950.2entrez:831243ExpressionAtlas:F4K5E0
GeneID:831243GO:GO:0031011Gramene:AT5G13950.1Gramene:AT5G13950.2
hmmpanther:PTHR13052hmmpanther:PTHR13052:SF2InterPro:IPR024867KEGG:ath:AT5G13950
PANTHER:PTHR13052Proteomes:UP000006548RefSeq:NP_001078580.1RefSeq:NP_196899.2
SMR:F4K5E0TAIR:AT5G13950UniGene:At.32000UniProt:F4K5E0
Coordinates (TAIR10) chr5:-:4496196..4500206
Molecular Weight (calculated) 104833.00 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.80
Length 939 amino acids
Sequence (TAIR10)
(BLAST)
001: MAADQRRKRM NSANVIGTSS REHYRAKRKK NASPDGALRS GDHITLEWDR NRSKVVSKKE QVGLSFRHLR EFVDVVPPRR NVLAQVCPVP HETFQLENLS
101: EVLSNEVWRS CLSDGERNYL RQFLPEGVDV EQVVQALLDG ENFHFGNPSL DWGTAVCSGK AHPDQIVSRE ECLRADKRRY YSNLEKYHQD IIDYLQTLKE
201: KWESCKDPEK DIVKMMWGRS RGGNAQVNGS CQGLTAASGS SSWNEDDKPD SSDNMISPVV RCGEVQRRSK RSGLEKEKTQ NNGVNVGGKV RKKNVLPKDS
301: IQQTDGAKYM SYLKISKKQH QIVTSMKQSG KSIQSRALNR IFGNIDSLDV QPYGVFVEEE QKKLNAHWLH LVKDLPAAYA IWKRLQLQKR DIISSMGREL
401: KEKCNLWMED KQQQYAAENP LQKHDVQYNN GESLNPNQSG DMAPDGEDSG IFSQISGKNH SPSKDSSSYG DQITDSGRCL LVGTHSSQVS SPDCGNNINH
501: EDREEKQYSS PCSPSRCHSF NRTDVEVNNY SSSIQGQSLP QASFPNEPHA SDLEDADHVG KHCAPELENA SLDERIPCIA TSLGEGSQFC SGGDVWQPVG
601: GIRQSYISRQ AYTPSGGLSI IHHPEGDEVA KNCFIDLESN MPEEVDRRKM LQRNANNSFG SFPNNNQNEI LQSLFNGQGM VSRTTEQLHP LLKVPLNEEH
701: KQIMGIGFQQ EGNNNMMVGN QFSGQFQDQI PASHAFPQDQ QRQVDAFGQG SMSDNIYRGF LMQRPDWNPN CTQIGVTAQP LLSTGPLLNQ NWQFRSMWAN
801: TNGVGCTSQG SQTGTERDPS LLRVANNAEQ IIHRGSSSDQ SLFSVLSQCS QLRPSRSAFE PESSSHQMVA SGNYGMLMGG GSTQVSSNLV QPANPLDYLS
901: GSNPTTSLMP DDVVWMNQSR QNSGLHDPLG KLYPRSWNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)