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AT2G04270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNAse E/G-like
Curator
Summary (TAIR10)
Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.
Computational
Description (TAIR10)
RNAse E/G-like (RNEE/G); FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: chloroplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E/G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Immunoglobulin-like fold (InterPro:IPR013783), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307); Has 10085 Blast hits to 8560 proteins in 1893 species: Archae - 5; Bacteria - 6357; Metazoa - 7; Fungi - 75; Plants - 95; Viruses - 0; Other Eukaryotes - 3546 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1530eggNOG:ENOG410IIHREMBL:AJ508604EnsemblPlants:AT2G04270
EnsemblPlants:AT2G04270.1entrez:814965ExpressionAtlas:Q8GVF1Gene3D:2.40.50.140
GO:GO:0003723GO:GO:0004540GO:GO:0006396hmmpanther:PTHR30001
hmmpanther:PTHR30001:SF1HOGENOM:HOG000029525InterPro:IPR004659InterPro:IPR012340
InterPro:IPR019307PaxDb:Q8GVF1Pfam:PF00686Pfam:PF10150
Pfscan:PS51166STRING:3702.AT2G04270.5SUPFAM:SSF50249tair10-symbols:RNEE/G
TIGRfam:TIGR00757TIGRFAMs:TIGR00757UniProt:Q8GVF1
Coordinates (TAIR10) chr2:+:1474961..1480014
Molecular Weight (calculated) 110912.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.35
Length 996 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVTEVPWRR LPQFSVSSRA SWLVSSGFPL SSYMFSHVER GKTFRLTLCF GVSRLRPRSA IVSAQQEQPP SRLKGLCEVV WIVEADLAAN EHLYVTGDPS
101: TLGSWEPDCA ISMYPTENDN EWEAKVKIAS GVNFRYNYLL KAGYGSSSDV IWRPGPQFSL SVPSSVNQDR KIIIRDSWMS MSISSKSQES YGWGSWIDDA
201: YLFPNCVTPA QSEDECTSAD SAIEVPRTHL NDKQVGAESF LCDELAAFSS ENSNLSALFS DNYQPIEEPW LIQESITLQH ERNMQTDSEQ DVESCDDNEN
301: NLNTDEQNHQ LTETLLPDGG FFQSESIATT ILINSSICTV QRIAVLEGGK LVELLLEPVK TNVQCDSVYL GVITKFVPHM GGAFVNIGSA RHSFMDIKSN
401: REPFIFPPFC DGSKKQAADG SPILSMNDIP APHEIEHASY DFEASSLLDI DSNDPGESFH DDDDEHENDE YHVSDHLAGL VNGTVVNHGA VEVGSENGHI
501: PMERGHSADS LDSNASVAKA SKVMSSKDNK WIQVRKGTKI IVQVVKEGLG TKGPTLTAYP KLRSRFWVLL TRCKRIGVSK KISGVERTRL KVIAKTLQPQ
601: GFGLTVRTVA AGHSLEELQK DLDGLLLTWK NITDEAKSAA LAADEGVEGA IPALLHRAMG QTLSVVQDYF NDKVEKMVVD SPRTYHEVTH YLQDMAPDLC
701: NRVELHDKGI PLFDLYEIEE EIEGILSKRV PLSNGGSLVI EQTEALVSID VNGGHGMFGQ GNSQEKAILE VNLAAARQIA REIRLRDIGG IIVVDFIDMA
801: DESNKRLVYE EVKKAVERDR SLVKVSELSR HGLMEITRKR VRPSVTFMIS EPCSCCHATG RVEALETTFS KIEQEICRQL AKMEKRGDLE NPKSWPRFIL
901: RVDSHMSSFL TTGKRTRLAI LSSSLKVWIL LKVARHFTRG TFEVKPFMDE KTVNERQHQV AISLLKKADA IADSSGKKKL TLIPIKKEKT SGKQRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)