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AT5G20300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Avirulence induced gene (AIG1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: multimeric translocon complex in the outer envelope membrane 132 (TAIR:AT2G16640.1); Has 993 Blast hits to 978 proteins in 186 species: Archae - 2; Bacteria - 206; Metazoa - 376; Fungi - 41; Plants - 292; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
EC:3.6.5.-eggNOG:ENOG410IVBUeggNOG:ENOG410YDT5EMBL:AF296825
EMBL:AY465351EMBL:CP002688EnsemblPlants:AT5G20300EnsemblPlants:AT5G20300.1
EnsemblPlants:AT5G20300.2entrez:832152ExpressionAtlas:Q6S5G3Gene3D:3.40.50.300
GeneID:832152Genevisible:Q6S5G3GO:GO:0005525GO:GO:0009707
GO:GO:0016021GO:GO:0016787GO:GO:0045036GO:GO:0046872
hmmpanther:PTHR10903hmmpanther:PTHR10903:SF68HOGENOM:HOG000243570InParanoid:Q6S5G3
InterPro:IPR006703InterPro:IPR024283InterPro:IPR027417KEGG:ath:AT5G20300
ncoils:CoilOMA:SECSVSYPaxDb:Q6S5G3Pfam:PF04548
Pfam:PF11886Pfam:Q6S5G3Pfscan:PS51720PhylomeDB:Q6S5G3
PRIDE:Q6S5G3PRO:PR:Q6S5G3PROSITE:PS51720ProteinModelPortal:Q6S5G3
Proteomes:UP000006548RefSeq:NP_001031911.1RefSeq:NP_197530.2SMR:Q6S5G3
STRING:3702.AT5G20300.1SUPFAM:SSF52540TAIR:AT5G20300UniGene:At.43458
UniProt:Q6S5G3
Coordinates (TAIR10) chr5:-:6853544..6856332
Molecular Weight (calculated) 89334.60 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.46
Length 793 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGFKDWVFA LSNSMASSRP LLGSDPFFRD PHQEQDNHSQ APAAPQPVTL SEPPCSTSSD LEILPPLSQQ QVPLESLYQS SIDLNGKKHN PLAKIGGLQV
101: QFLRLVQRFG QSQNNILVSK VLYRVHLAML IRAEESELKN VKLRQDRAKA LAREQESSGI PELDFSLRIL VLGKTGVGKS ATINSIFGQP KSETDAFRPG
201: TDRIEEVMGT VSGVKVTFID TPGFHPLSSS STRKNRKILL SIKRYVKKRP PDVVLYLDRL DMIDMRYSDF SLLQLITEIF GAAIWLNTIL VMTHSAATTE
301: GRNGQSVNYE SYVGQRMDVV QHYIHQAVSD TKLENPVLLV ENHPSCKKNL AGEYVLPNGV VWKPQFMFLC VCTKVLGDVQ SLLRFRDSIG LGQPSSTRTA
401: SLPHLLSVFL RRRLSSGADE TEKEIDKLLN LDLEEEDEYD QLPTIRILGK SRFEKLSKSQ KKEYLDELDY RETLYLKKQL KEECRRRRDE KLVEEENLED
501: TEQRDQAAVP LPDMAGPDSF DSDFPAHRYR CVSAGDQWLV RPVYDPQGWD RDVGFDGINI ETAAKINRNL FASATGQVSR DKQRFTIQSE TNAAYTRNFR
601: EQTFSVAVDL QSSGEDLVYS FQGGTKLQTF KHNTTDVGVG LTSFGGKYYV GGKLEDTLLV GKRVKLTANA GQMRGSGQTA NGGSFEACIR GRDYPVRNEQ
701: IGLTMTALSF KRELVLNYGL QTQFRPARGT NIDVNINMNN RKMGKINVKL NSSEHWEIAL ISALTMFKAL VRRSKTEMTE ENEEEKIVNF LVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)