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AT4G31270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 462 Blast hits to 461 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 436; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J057eggNOG:ENOG410YR61EMBL:AK118674EMBL:BT005287
EMBL:CP002687EnsemblPlants:AT4G31270EnsemblPlants:AT4G31270.1entrez:829254
GeneID:829254GO:GO:0003700GO:GO:0006355GO:GO:0009506
Gramene:AT4G31270.1hmmpanther:PTHR33492hmmpanther:PTHR33492:SF4HOGENOM:HOG000148318
KEGG:ath:AT4G31270ncoils:CoilOMA:KHEASIDPfam:PF13837
PhylomeDB:Q8GWR8Proteomes:UP000006548RefSeq:NP_194855.2TAIR:AT4G31270
UniGene:At.31756UniProt:Q8GWR8
Coordinates (TAIR10) chr4:-:15183291..15184503
Molecular Weight (calculated) 33371.20 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.75
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEGTSGSRR TRSQVAPEWA VKDCLVLVNE IAAVEADCSN ALSSFQKWTM ITENCNALDV SRNLNQCRRK WDSLMSDYNQ IKKWESQYRG TGRSYWSLSS
101: DKRKLLNLPG DIDIELFEAI NAVVMIQDEK AGTESDSDPE AQDVVDLSAE LAFVGSKRSR QRTMVMKETK KEEPRTSRVQ VNTREKPITT KATHQNKTMG
201: EKKPVEDMST DEEEDETMNI EEDVEVMEAK LSYKIDLIHA IVGRNLAKDN ETKDGVSMDD KLKSVRQQGD ELIGCLSEIV STLNRLHEVP QEIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)