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AT5G44280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING 1A
Curator
Summary (TAIR10)
Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.
Computational
Description (TAIR10)
RING 1A (RING1A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1B (TAIR:AT1G03770.1); Has 87950 Blast hits to 40013 proteins in 1982 species: Archae - 331; Bacteria - 6780; Metazoa - 33639; Fungi - 11315; Plants - 4932; Viruses - 1435; Other Eukaryotes - 29518 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-415-MONOMERBioGrid:19701EC:6.3.2.-EMBL:AB011475
EMBL:AK228896EMBL:CP002688EnsemblPlants:AT5G44280EnsemblPlants:AT5G44280.1
entrez:834451ExpressionAtlas:Q9FKW0Gene3D:3.30.40.10GeneID:834451
Genevisible:Q9FKW0GO:GO:0001709GO:GO:0005634GO:GO:0006351
GO:GO:0008270GO:GO:0010076GO:GO:0010077GO:GO:0010492
GO:GO:0016567GO:GO:0016568GO:GO:0016874GO:GO:0035102
GO:GO:0045814GO:GO:0045892hmmpanther:PTHR10825hmmpanther:PTHR10825:SF43
HOGENOM:HOG000077691InParanoid:Q9FKW0InterPro:IPR001841InterPro:IPR013083
InterPro:IPR017907iPTMnet:Q9FKW0ncoils:CoilPfam:PF00097
Pfam:Q9FKW0Pfscan:PS50089PhylomeDB:Q9FKW0PRIDE:Q9FKW0
PRO:PR:Q9FKW0PROSITE:PS00518PROSITE:PS50089ProteinModelPortal:Q9FKW0
Proteomes:UP000006548RefSeq:NP_199241.2scanprosite:PS00518SMART:SM00184
SMR:Q9FKW0SUPFAM:SSF57850TAIR:AT5G44280tair10-symbols:ATRING1A
tair10-symbols:RING1AUniGene:At.30083UniPathway:UPA00143UniProt:Q9FKW0
Coordinates (TAIR10) chr5:-:17836115..17839114
Molecular Weight (calculated) 59200.80 Da
IEP (calculated) 4.46
GRAVY (calculated) -1.09
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVKNNSFSS AEIPDVADQP RDRFNPEATQ DLQEKDETKE EKEGDEEVKH DEAEEDQEVV KPNDAEEDDD GDDAEEDEEE EVEAEEDEEA EEEEEEEEEE
101: EEEEEDSKER SPSSISGDQS EFMEIDLGEI RKDVQCPICL GIIKKTRTVM ECLHRFCREC IDKSMRLGNN ECPACRKHCA SRRSLRDDPK FDALIAALFT
201: NIDSYEEEEL AFHEDEMARN KQIQASIAQI SQRQSEALVK RRSLGKEAAV LMRSPRIASG SRRRRNSRNM EQQNASEAHE DDDNDDNNNR GRDKDSSSDE
301: RGTEVRQKKR RKRSTSRSTQ HPSSSGANKN NGNCADNDTE VYRDTKGISP GLVWNPEILA WGRGGTRSNT RHGNNTSGGS SKSVRNARVN KLVEYLRSSV
401: DGSSVELDIH VKLVSLDTKC IPDLPQPYLC CRPTLLVKQL REFVALQIHL KTEEVELLVT RRRVGEDAAI ENLPAVTPAS AAASKDEMLS LEDNETLSRL
501: KIDFISSHEQ HLIIAYRKKQ TE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)