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AT1G03770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING 1B
Curator
Summary (TAIR10)
Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.
Computational
Description (TAIR10)
RING 1B (RING1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1); Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10; Bacteria - 208; Metazoa - 3701; Fungi - 387; Plants - 512; Viruses - 317; Other Eukaryotes - 1866 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2496-MONOMERBioCyc:ARA:GQT-2663-MONOMERBioCyc:ARA:GQT-457-MONOMEREC:6.3.2.-
eggNOG:ENOG410XQ5GeggNOG:KOG0311EMBL:AC003027EMBL:AK226183
EMBL:CP002684EnsemblPlants:AT1G03770EnsemblPlants:AT1G03770.1entrez:839413
ExpressionAtlas:Q0WX00Gene3D:3.30.40.10GeneID:839413Genevisible:Q0WX00
GO:GO:0001709GO:GO:0006351GO:GO:0008270GO:GO:0010076
GO:GO:0010077GO:GO:0010492GO:GO:0016567GO:GO:0016568
GO:GO:0016874GO:GO:0035102GO:GO:0045892hmmpanther:PTHR10825
hmmpanther:PTHR10825:SF43HOGENOM:HOG000077691InParanoid:Q0WX00InterPro:IPR001841
InterPro:IPR013083InterPro:IPR017907iPTMnet:Q0WX00PaxDb:Q0WX00
Pfam:PF00097Pfam:Q0WX00Pfscan:PS50089PhylomeDB:Q0WX00
PIR:B86168PRIDE:Q0WX00PRO:PR:Q0WX00PROSITE:PS00518
PROSITE:PS50089ProteinModelPortal:Q0WX00Proteomes:UP000006548RefSeq:NP_171873.2
scanprosite:PS00518SMART:SM00184SMR:Q0WX00STRING:3702.AT1G03770.2
SUPFAM:SSF57850TAIR:AT1G03770tair10-symbols:ATRING1Btair10-symbols:RING1B
UniGene:At.49848UniPathway:UPA00143UniProt:Q0WX00
Coordinates (TAIR10) chr1:+:944772..947431
Molecular Weight (calculated) 51977.40 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.97
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSLKSFSAA EEEDDQLGRN SEAERFNPEA VEKEEDPDKM DEKDESGDEE DDVKRDQVEA EDEEALGEEE DSKERSQSSS AGELSESEYM VVDLADICKD
101: VQCSICLGII RKTRTVMECL HRFCRECIDK SMRLGNNECP TCRKHCASRR SLRDDPNFDA LIAALFKNID KFEEEELNFR QDDEARNKQI QASIAQVSQR
201: QSKALVKRKS VGKGTAILSR SRRSGGGSRR RRNCRNIEQD TSEANDDDDQ NKRGKDSSSD EPCERQRKKR SATQPSSSNA NNNDNCAGNG TEQTHQRDSR
301: VISPVLVWNS ELIAWGRGGT RSNTRQGNNN QGAISKRNAR LKRLVEYLGS LEGNSVELDI HLKLVSLDTE GLLNLHEPYL CFRPTLLVKQ LREYVARHLK
401: LKAEEVELLV SKDGDTVIGN KTSTEKMQSL QDDETVAKLK VDCISSNGYM IVVYRRKQIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)