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AT3G44690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G44690EnsemblPlants:AT3G44690.1entrez:823595
GeneID:823595Gramene:AT3G44690.1KEGG:ath:AT3G44690OMA:VDHEDAR
PaxDb:F4J364PRIDE:F4J364ProteinModelPortal:F4J364Proteomes:UP000006548
RefSeq:NP_190055.2STRING:3702.AT3G44690.1TAIR:AT3G44690UniGene:At.36123
UniProt:F4J364
Coordinates (TAIR10) chr3:-:16230685..16234215
Molecular Weight (calculated) 137967.00 Da
IEP (calculated) 5.73
GRAVY (calculated) -1.26
Length 1176 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLMRERIRDS LPQRLSSPSP TSDRDGNESS MIKLGDVSSR SDKIDMVSHR VDEQKHDIDG IRQDSDLYDV EIQRSTEFSN KDRREEEERD DERYTKHYHL
0101: QEDSGKRYPE SSRFITSHDH PSRLSDEPKP SRFITSHDDE YSPSHGKINV LLRNDKTKRL ESISRECSDS SRHSEDGRER DTYRYESSPL SQVGSSVADF
0201: QDESSRLVSS DSRSFGCVND SDERRRHDYD GNLCVPQVLR TRRVDDYVGR NSPRDQQVRD LSRGDHDSPV VSRCVKEIVD EARDNYHIGS DIAMREFPSV
0301: RHEVNNVARE NDLFMQRRGS LSKSHVCGSN IADVDAADTH LEFSRKERMA DHYESVKEDY PFVELGSRVV DERDDHYRNF RNEERKVVYL DNKCQVLRKD
0401: YLYDGVDSKK NLDFSEPYAV VDRDDKASQS ITRCLNKERE AYLDNERNAV FSDDKRQELR NEYHPGNDGR IHSDVDMADI VVDQDGRGVQ LQRRCLNKGK
0501: AAYLDNERKD VYLNYKIQQL EKDYDSRSDA KIYPDDVNRL DILADWEREN SRGLRYRGGS LNDRREAYLQ CESQQLLNDY ETNSYGIMHP DVNKSDTLED
0601: REDSRGLRYR GGSLNDKKEA YMQCERQRLL NDYETNSYGM MHPHVNKSDT LVDHEDGRGR RYRGVSLNDK KEAYLQCERQ RLLNDHETDS YVMRHPDVNK
0701: SDILVDHEDA RGRRYGGVSL NDKKDAYLQC ENQQLLNDYE TDSYVMMPPD VNRSDILVDH EDARGLRYRG VSLNDRKEAY FQSESQQLLK DHETNSFGMM
0801: HPSLNKSDIL VNGEEARALE RRRGSFDDGE ESYMDYKRGD AYLHYESQQL KKDHDYGIDD RIYRDVNSSD IIVDHGDAKA LELRRVAFID RNEAYLDNES
0901: KDVYQHYNKQ QLKYYDSGID ERMYPAVTKA EIVDRGGARA LERKGMSSND GREAYLPYES QQLLRDHEID SYGVMHPDVS RSSAGKQDEE ALRGRRYLFD
1001: DRDQVYLDDE RLQRRNGGDV KVYANMRYQD GRQEVYHSND SILRTRDDYG LRDNASEVMH ENMPYDYNYR DAKQSRMSYE KADSKRFREH EVAYDYRDKL
1101: GNYAVDGGIS REQFRYSADE RNSGNVDHTS TRRRRLSAKE RLGGRVEEDS RVHVKHRLHQ VRNPNLKGKS HKRYLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)