AT4G33990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2758 (EMB2758); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G30700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16290141..16292612 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92419.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 823 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFGTFSLPR QIPTCKGGRF TRVLQSIGSV IREFSASANA LQDCWKNGNE SKEIDDVHTL FRYCTNLQSA KCLHARLVVS KQIQNVCISA KLVNLYCYLG 101: NVALARHTFD HIQNRDVYAW NLMISGYGRA GNSSEVIRCF SLFMLSSGLT PDYRTFPSVL KACRTVIDGN KIHCLALKFG FMWDVYVAAS LIHLYSRYKA 201: VGNARILFDE MPVRDMGSWN AMISGYCQSG NAKEALTLSN GLRAMDSVTV VSLLSACTEA GDFNRGVTIH SYSIKHGLES ELFVSNKLID LYAEFGRLRD 301: CQKVFDRMYV RDLISWNSII KAYELNEQPL RAISLFQEMR LSRIQPDCLT LISLASILSQ LGDIRACRSV QGFTLRKGWF LEDITIGNAV VVMYAKLGLV 401: DSARAVFNWL PNTDVISWNT IISGYAQNGF ASEAIEMYNI MEEEGEIAAN QGTWVSVLPA CSQAGALRQG MKLHGRLLKN GLYLDVFVVT SLADMYGKCG 501: RLEDALSLFY QIPRVNSVPW NTLIACHGFH GHGEKAVMLF KEMLDEGVKP DHITFVTLLS ACSHSGLVDE GQWCFEMMQT DYGITPSLKH YGCMVDMYGR 601: AGQLETALKF IKSMSLQPDA SIWGALLSAC RVHGNVDLGK IASEHLFEVE PEHVGYHVLL SNMYASAGKW EGVDEIRSIA HGKGLRKTPG WSSMEVDNKV 701: EVFYTGNQTH PMYEEMYREL TALQAKLKMI GYVPDHRFVL QDVEDDEKEH ILMSHSERLA IAFALIATPA KTTIRIFKNL RVCGDCHSVT KFISKITERE 801: IIVRDSNRFH HFKNGVCSCG DYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)