AT4G18300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Trimeric LpxA-like enzyme | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10118852..10120981 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79243.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 709 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAQKKPAAA KVREDSEDLS RQRLQAILLA DSFTTQFRSI TLERPKVLLP IVNIPMIDYT LAWLESAGIE EVFVFCCAHS SQIIDYLKKS EWYTRPNPNL 101: LVRTIVSHNS TSVGDALRYI YEQQTETSQI QGDFVLVSGD TVSNMPLADL IQQHRDRKKK DEKAIMTMVF KKQSRLGIGS DQLFVAVDPL TKQLLHYEEC 201: NSRGGDFCLD KSLLDSTVLC SDMQDCYIDI CSPEVLSLFE DNFDYQHMRR HFVNGLLVDD IMGYKIFTHE IQSSCYAARI DNLRSYDTVS KDIIQRWTYP 301: YVPNIDFSGN RPVKLGRRGI YRASDAVQSH TADVGASTVI GYGTKIGNGG KIYNSVIGNG CCIGSNVVIQ GSYIWNNVTI EDGCEIRNAI VCDGVKVRAG 401: AVLQPGVVLS FSVVVGRDFV VPAYSKVSLL QQPTTEDSDE ELEYADSSSG TADHSSGLNN LQIESKASEL GPDGAGYIWE ICDSAHDEEW KHSVVPIPMD 501: KLADITGAMD DDDIEDDIVV PPSGELKSDT DIINTDANDS YGDFEREVEE EFLSAVEKDN KADIVIPLIN SHRLAYNMDS ADCAGAVFYS MMRLAVKSPH 601: NSATELYRNA MGVITKWKGV LGFYLKQTDA QIEVIMKFEE MCQESEELSP LFAKLLPFLY DKDVVQEDAI LRWGEEKAGA DDCDKVYLNK CESFIKWLKE 701: ASEEEEEDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)