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AT2G45100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclin/Brf1-like TBP-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclin/Brf1-like TBP-binding protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 2756 Blast hits to 2323 proteins in 394 species: Archae - 462; Bacteria - 31; Metazoa - 731; Fungi - 345; Plants - 127; Viruses - 25; Other Eukaryotes - 1035 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1405eggNOG:KOG1598EMBL:CP002685EnsemblPlants:AT2G45100
EnsemblPlants:AT2G45100.1entrez:819117Gene3D:1.10.472.10GeneID:819117
GO:GO:0000126GO:GO:0006355GO:GO:0006384GO:GO:0008270
Gramene:AT2G45100.1hmmpanther:PTHR11618hmmpanther:PTHR11618:SF4InParanoid:F4IW19
InterPro:IPR000812InterPro:IPR011665InterPro:IPR013150InterPro:IPR013763
InterPro:IPR029529iPTMnet:F4IW19KEGG:ath:AT2G45100KO:K15196
ncoils:CoilOMA:TENHNYEPANTHER:PTHR11618PANTHER:PTHR11618:SF4
PaxDb:F4IW19Pfam:PF00382Pfam:PF07741PRIDE:F4IW19
ProteinModelPortal:F4IW19Proteomes:UP000006548RefSeq:NP_182035.2SMART:SM00385
SMR:F4IW19STRING:3702.AT2G45100.1SUPFAM:SSF47954TAIR:AT2G45100
UniGene:At.50139UniProt:F4IW19
Coordinates (TAIR10) chr2:-:18595348..18598088
Molecular Weight (calculated) 62957.00 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.60
Length 557 amino acids
Sequence (TAIR10)
(BLAST)
001: MVWCKHCGKN VPGIRPYDAA LSCDLCGRIL ENFNFSTEVT FVKNAAGQSQ ASGNILKSVQ SGMSSSRERI IRKATDELMN LRDALGIGDD RDDVIVMASN
101: FFRIALDHNF TKGRSKELVF SSCLYLTCRQ FKLAVLLIDF SSYLRVSVYD LGSVYLQLCD MLYITENHNY EKLVDPSIFI PRFSNMLLKG AHNNKLVLTA
201: THIIASMKRD WMQTGRKPSG ICGAALYTAA LSHGIKCSKT DIVNIVHICE ATLTKRLIEF GDTEAASLTA DELSKTEREK ETAALRSKRK PNFYKEGVVL
301: CMHQDCKPVD YGLCESCYDE FMTVSGGLEG GSDPPAFQRA EKERMEEKAS SEENDKQVNL DGHSDESSTL SDVDDRELDC YFRTPEEVRL VKIFFDHENP
401: GYDEKEAAKK AAGLNACNNA SNIFEASKAA AAKSRKEKRQ QRAEEEKNAP PPATGIEAVD SMVKRKKFRD INCDYLEELF DASVEKSPKR SKTETVMEKK
501: KKEEHEIVEN EQEEEDYAAP YEQDEEDYAA PYEMNTDKKF YESEVEEEED GYDFGLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)