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AT4G27370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.699
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19369591 (2009): nucleus nuclear matrix
  • PMID:19369591 (2009): plasma membrane
  • PMID:18179725 (2008): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
member of Myosin-like proteins
Computational
Description (TAIR10)
VIIIB; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: chloroplast, myosin complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G54280.2); Has 7343 Blast hits to 6663 proteins in 755 species: Archae - 3; Bacteria - 49; Metazoa - 4831; Fungi - 770; Plants - 447; Viruses - 2; Other Eukaryotes - 1241 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5022eggNOG:KOG0160EMBL:AL030978EMBL:AL161571
EMBL:CP002687EnsemblPlants:AT4G27370EnsemblPlants:AT4G27370.1entrez:828845
Gene3D:3.40.50.300GeneID:828845Genevisible:F4JIU4GO:GO:0003774
GO:GO:0005524GO:GO:0016459Gramene:AT4G27370.1hmmpanther:PTHR13140
hmmpanther:PTHR13140:SF384HOGENOM:HOG000029608InParanoid:F4JIU4InterPro:IPR000048
InterPro:IPR001609InterPro:IPR027417KEGG:ath:AT4G27370ncoils:Coil
OMA:EAFNIVQPaxDb:F4JIU4Pfam:F4JIU4Pfam:PF00063
Pfam:PF00612Pfscan:PS50096Pfscan:PS51456PIR:A85318
PIR:T05761PRIDE:F4JIU4PRINTS:PR00193PRO:PR:F4JIU4
PROSITE:PS50096PROSITE:PS51456ProteinModelPortal:F4JIU4Proteomes:UP000006548
RefSeq:NP_194467.5SMART:SM00015SMART:SM00242SMR:F4JIU4
STRING:3702.AT4G27370.1SUPFAM:SSF52540TAIR:AT4G27370tair10-symbols:ATVIIIB
tair10-symbols:VIIIBUniGene:At.54526UniProt:F4JIU4
Coordinates (TAIR10) chr4:-:13694881..13700780
Molecular Weight (calculated) 129839.00 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.50
Length 1134 amino acids
Sequence (TAIR10)
(BLAST)
0001: MMKSSVKEIL ESLRLLDSSE RSSSLPSPST FRAPMPLIRQ SLPAKFRNAI SLESKTIEKE DKDWSTEQIT QSAEKEKTGN EVVKISTAQM SRAKNSHDPE
0101: WINSAEYFVR EKLCVWCRVA ANGQWHLGKI HSTSSSDDVC VMLSANDDVR TMEEIFPANP EILEGVEDLT QLSYLNEPSL LYNLRVRYSQ DLIYSKAGPV
0201: LIAVNPFKNV QIYGEEFLSA YQKNALDAPH VYAVADAAYD DMMREEKNQS IIISGESGAG KTETAKYAMQ YLEALGGGSF GVENEILKTN CILEAFGNAK
0301: TSRNDNSSRF GKLMEIHFSA KGKICGAKLE TFSLDQSRVA QLCNGERCYH IFYQLCAGAS PILKERLKIK AASEYNYLNQ SNCLTIDRTD DAQKFHKLME
0401: AFNIVQIPQE YQERTFALLA AVLWLGNVSF EVIDNENHVE VVADEAVTNV AMLMGCNSKK LMVVLSTCKL QAGRDCIAKR LTLRQATDMR DSLAKIIYAS
0501: LFNWLVEQIN ISLEVGNSRT GRSISILDIY GFESFKDNSF EQFCINYANE RLQQHFNRHL FKLEQEEYEG DGIDWTKVEF IDNQECLNLI EKKPIGLVSL
0601: LNEESNFPKA TDTTFANKLK QHLNANSCFK GERGRGFRIK HYAGEVLYNT NGFLEKNRDP LHVDLIQLLS LCKCQLLNLF STKMHHDFLK PATFSDSMNQ
0701: SVIAKFKGQL FKLMNKLEDT TPHFIRCIKP NSNQLPGLYE ENHVLQQLRC CGVLEIVRIS RSGYPTRLTH QELAVRYGCL LLDTRISQDP LSTSKAILKQ
0801: CNLPPEMYQV GYTKIYLRTG VISVLEERKK YVLRGILGLQ KQFRGYQTRE YFHNMRNAAV ILQSYIRGEN ARRNYIVVGE SAIVSTAITK ELDAAIHLQY
0901: MVRKWLARKL LNSTQQKNKP RNEKKKTRRK STKRVSEDKE LLSEQFEVQP CVLADLQSRV LKVEAAIMQK EDENTALQEE LQRFEERWLE NETRMKSMED
1001: TWQKHMSSMQ MSLAAACKVL APDKTASHGT DSEDTMSFGT PTKELKGSLS DVNNLSTEFD QRSVIIHEDP KSLVEVKSDS ISNRKQHAEE LRRLKSRFEK
1101: WKKDYKTRLR ETKARVRLNG DEGRHRNWWC KKSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)