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AT4G02660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.762
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Beige/BEACH domain ;WD domain, G-beta repeat protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Beige/BEACH domain ;WD domain, G-beta repeat protein; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain ;WD domain, G-beta repeat protein (TAIR:AT1G03060.1); Has 7684 Blast hits to 5756 proteins in 390 species: Archae - 8; Bacteria - 1306; Metazoa - 3489; Fungi - 1068; Plants - 719; Viruses - 0; Other Eukaryotes - 1094 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNQCeggNOG:KOG1786eggNOG:KOG1788EMBL:AC002330
EMBL:AL161495EMBL:CP002687EnsemblPlants:AT4G02660EnsemblPlants:AT4G02660.1
entrez:828210Gene3D:1.10.1540.10Gene3D:1.25.10.10Gene3D:2.130.10.10
Gene3D:2.30.29.40Gene3D:2.60.120.200GeneID:828210Genevisible:F4JHT3
Gramene:AT4G02660.1hmmpanther:PTHR13743hmmpanther:PTHR13743:SF84HOGENOM:HOG000030032
InParanoid:F4JHT3InterPro:IPR000409InterPro:IPR001680InterPro:IPR011989
InterPro:IPR011993InterPro:IPR013320InterPro:IPR015943InterPro:IPR016024
InterPro:IPR017986InterPro:IPR019775InterPro:IPR023362iPTMnet:F4JHT3
KEGG:ath:AT4G02660OMA:FQISACEPaxDb:F4JHT3Pfam:PF00400
Pfam:PF02138Pfam:PF14844Pfscan:PS50082Pfscan:PS50197
Pfscan:PS50294PIR:T01083PRIDE:F4JHT3PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50197PROSITE:PS50294PROSITE:PS51783
ProteinModelPortal:F4JHT3Proteomes:UP000006548RefSeq:NP_192175.3scanprosite:PS00678
SMART:SM00320SMART:SM01026STRING:3702.AT4G02660.1SUPFAM:SSF48371
SUPFAM:SSF49899SUPFAM:SSF50729SUPFAM:SSF50978SUPFAM:SSF81837
TAIR:AT4G02660UniGene:At.75279UniProt:F4JHT3
Coordinates (TAIR10) chr4:-:1159927..1173791
Molecular Weight (calculated) 393347.00 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.15
Length 3527 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKWGTLLKDL KDKVGVAETT ADLIAGEAIS DPTTPPSSSQ ASPSSSFAAL AQHDFNLLSP TSRDKLKLEL DFKRYWEEFR SSSSEQEKEA ALNLSVNTFC
0101: RLVKQHANVD QLVTMLVEPH IFSFVIGRAF VADVEKLKVS SRKRSLDVEK AIEFFSEVTK DGSSHGANLL TAIEVLASGP FDKQSLLDSG ILCCLIHTFN
0201: AFLTYSVASE GEKTVNYEEK VEGSVVNIMK ALASHPSAAQ SLIEDDSLQL LFKMVANGSL MAFSRFKVGL VSFHNIQLHK NAMQILGLLL VNDNGSTASY
0301: IRKHHLIKVL LMAVKDFDPD CGDSAYTVGI VDLLLECVEL SYRPETGGVR LKDDIRNAHG YHFLVQFALI LSSMPKDIVF AFDHSSPHKN RGSNDSKKQP
0401: PLSLKTRQND DSEKQQSLSL NSRQNDEFAL KHFSPALSRL LDVLVTLAQT GPIESSGTST SLLSQTKLTG YSRRQTPSAN NRYDEPCEQG SGKVKDLEAV
0501: QMLQDIFLKA ENKDLQAEVL NRMFKIFTSH LENYRICQEL KTVPLLVLNM GGFPSSLQEL ILKILEYAVT VVNCVPEQEL LSLCFLLQQP IDSELKHTIL
0601: SFFVKLTSFD QQYKKVLGEV GVLEVLQDDL KQHKLLRGPD QYSGVSNHLD RVPSSPSFKQ HLDSQDAIIS SPKLMESGSG KLPIFEVERT ITVGWDCMIS
0701: LLKNSQVNQE AFRSANGVTV ILPFLIADEH RTSILRIFSC LITGDIKQVH HEELEALIDV LKSGMVTRVS GDQYKLHYEV RCDIMGALWR IVGVNGSAQR
0801: VFGEATGFSL LLTTLHTFQG EEECRDESHL MVYIKLFKHL LRLITTAVCE NAINRMKLHS VITSQTFYDL LVESGLLCVD LERHVIQLLL ELALEVLVPP
0901: FLTSESMASA EMAECEKASF LVKTASGQFN PDKQKIYNAG AVRVLIRSLL LCTPKLQLEF LNLLERLARA SPFNKETLTS AGCVELLLEI IYPFLQGSSP
1001: FLSHALKIVE VLGAYRLSPS ELKMLCRYVM QMRVMNSGPS LIGMMEKLIL MEEDTGLECV SLAPFVEMDM SKTGHASVQV SLGERSWPPA AGYSFVCWVQ
1101: FRNFLTTQEL ESEVYKAGGS SKTPILSGQQ SEQNIFRIFS VNAISNGSPS YAELYFQEDG ILTLATSNSN SLSFSGLETE EGKWHHLAVV HSKPNALAGL
1201: FQASVAYVYI DGKLRHMGKL GYSPSPVGKS LQVIIGTSAT CARACGGDSM AILDLLDTDM SSGIQKFEDS NRQGDSKAHC SGIVWDLDRL GNLSIQLPGK
1301: KLIFAFDGTC SEFMRATGSF SLVNLVDPLS AAASLIGGIP RFGRLVGNVS LCRQNVIGNS IRPVGGMAVV LALVEAAESR DMLHMALSLL ACALHQNSQN
1401: VKDMETYTGY HLLALFLRPK MALFDMQCLE IFFQISACEA FFSEPKKLES GQTTISMSPT EIIPENNYED PTLCKFQYET SSVGSHGDMD DFSGRKDSFS
1501: HLSELEMGDN PVETSNCIVL SNADMVEHVL LDWTLWVTAP VSIQIASLGF LENLISILWY RSHNLAILRQ INLVKHLLVT LQRGDVEVLV LEKLVILLRC
1601: ILENGFLTPE LEDVVRFAIM TFNPPEIKSQ NSSMRESMGK HVIVRNLVLE MLIDLQVTIK AEELLEQWHK TVSSKLITYF LDGAVHPSSM RWIMTLLGVC
1701: LTSSPNFSLK FFASGGYQGL VRVLQSFYDS PDIYYILFCL IFGKPVYPRL PEVRMLDFHA LMPDDGSHVE LNFVDLLDSV VAMAKSTFDR LIMQSMLAHQ
1801: SGNLSQVSAR CVAELVEGYA DMTGELQGKA LMHKTYAARL MGGEASAPAT ATSVIRFMVD LAKMCPQFSA ACKNTEFLQK CADLYFSCVR AFHAVKLAKQ
1901: LSMKAEEQNI TGGDDSSVEG NFCRVSHQDM STKTSISAGS FPQDQTSSVI SVDMYIPSDY VAVDKVENFL TTPPGESNKS FQGREYIAKQ DGDHVGSVSA
2001: SSEMKSLDLT GSSSQVQPID SRSSESFSML ESPLLSEKSS LEVPFIPSPS KSSTISTPHP SHISVSEFDA SSDQSSGSQG SSAVHTLFTI SPKVLLETDE
2101: SGYGGGPCSA GASAVLDFMA EVCADIMTEQ IKAVQALESI LEMLPLYVDP ECVVVFQGLC LSRVMNYLER RFLRDDEEDD KKLDKRKWSA NLDAFCWMIV
2201: DRVYMGAFPQ PTGVLRTLEF LLSILQLANK DGRVEEVTSS GKGLLSIGRA TRQLDAYVHS ILKNTNRTIL YCFLPSFLIT IGEEDLPSRL GLLVESTKKQ
2301: TSKLSGKESG IDVSAVLQLL VANKNIILCP SNLDTDLNCC LCVNLISLLH DQRKNVQNMA SNIIKYLLVH RKSALEDLLV KKPHRGQKFD VLHGGFDRLL
2401: TGNLPEFSKW LESSEQIITK VLEQGAAVMW IQYIAGSAKF PDVRMKGMDG RRTREMGRKL RDTSKLDLKH WEQVNERRYA LEVVRDAMSA ELRVVRQNKY
2501: GLILHAESVW PTHLQQLVHE RGIFPMRISH GVEDLKWQLC PIEGPYRMRK KLERCKLKID SLHNLLEGKL ELGEIELLKS KSEDGLVISD MDSEPAFLLS
2601: ELYSESFSEE ADDLKDVPSA RNGWNNDRAT STNAASLHNS LSFGGKSSST AVSVPISVNT DEKSETGSPI KSSSGKMDEI KHVEEESEKE LKDDGEYLIR
2701: PYLEHLEKIR FRYNCERVVG LDKHDGIFLI GELCLYVIEN FYIDDHGCIC EKECEDELSI IDQAQGLKKQ FHGSLESKSK SSTLWSTTIK IGAVGGRAWA
2801: YGGGAWGKEK VRVTGNLPHP WHMWKLDSVH EILKRDYELR RVAVEIFSMD GCNDLLVFHK KEREEVFRNL LAMNLPRNSM LDTTISGSAK QESKEGSRLF
2901: KLMAKSFTKR WQNGEISNFQ YLMHLNTLAG RGYSDLTQYP VFPWILADYD GESLDLSDPN NFRKLDKPMG CQTPEGEEEF RKRYESWDDP EVPQFHYGSH
3001: YSSAGIVLFY LIRLPPFSAE NQKLQGGQFD HADRLFNSIR ETWLSAAGKG NTSDVKELIP EFFYMPEFLE NRFNLDLGEK QSGDKVGDVI LPPWARGSVR
3101: EFIRKHREAL ESDYVSENLH HWIDLIFGHK QRGKAAENAV NVFYHYTYEG NVDVDAVTDP AMKASILAQI NHFGQTPKQL FQKPHVKRRT DRKVPPHPLK
3201: HSMHLVPRNI RKCSSSINQI ITFNDKLLLT GANCLLKPRG YKKYIRWGFP DRTLRFMSYD QDKLLSTHEN LHEGNQIQCA GVSHDGRIVV TGAEDGLVSV
3301: WRVSKDGPRG SRRLRLEKSL CAHTAKVICL RVSQPYMMIA SSSDDCTVII WDLSSLSFVR QLPNFSVPVT VVYINDLTGE IVTAAGSVLA VWSINGDCLS
3401: VVNTSQLPTD LIVSVAGSTF SDWLETTWYV TGHQSGALKV WRMVHCTDPV SVPSKTPSNR TGGLNLGNQK PEYKLLLHKE LKFHKQPVTS LHLTTDLKQL
3501: LSGDSAGHLL SWTVPDEILK ASLKKAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)