AT2G19380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA recognition motif (RRM)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898), RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, U1-type (InterPro:IPR003604), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G22100.1); Has 16733 Blast hits to 13987 proteins in 784 species: Archae - 1; Bacteria - 1070; Metazoa - 8707; Fungi - 1999; Plants - 3252; Viruses - 2; Other Eukaryotes - 1702 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8383856..8386604 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69601.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 613 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVWFQCDDCG ENLKKPRLPR HMSMCTATKF SCIDCGNMFG QVSVHYHNQC ITEAEKYGPM VRSNGESSKQ KHDFDINAEL FNSQWFCSLC NATMTCEQDY 101: FAHVYGKKHQ EKANEVADMD YSKQQSEHPA VDKNNLTQQP DLDIYVGLSN DYPWFCSLCD INATSEQTLL AHANGKKHRV KVERFDAEQQ KRQSTQHSTV 201: DKKDYSKQQI EVDINVGLSN CYPWFCSLCN VKATCQQNLL SHANGRKHRE NVELFDATQQ QQLEKTTVDK KDTTVNASDG NSEQKKVDLL VSSGVANGYS 301: QAHKKRKLET CDETWKREVV QAEEAKGGGE QKSESKKAKK QDKEKKRKKD KKQTKSDSDF EHDKEDIKQL LVAYSKEELV NLIYKTAEKG SRLISAILES 401: ADRDIAQRNI FVRGFGWDTT QENLKTAFES YGEIEECSVV MDKDTGRGKG YGFVMFKTRK GAREALKRPE KRMYNRIVVC NLASEKPGKA GKEQDMAEPV 501: NIDLTKMANQ SEAVLPGIEL GRGHVLEKMH HQQQQTMDMF GQNMPFYGYS HQFPGFDPMY GALSGNQMLA GLPNYGMFGS GMMTNQGSML PPPNHLGMAG 601: QYFGDGEQAW HQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)