AT1G77310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 493 Blast hits to 482 proteins in 163 species: Archae - 0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29051671..29056179 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 79147.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.26 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||
| Length | 717 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDEPKLPTD DGPTFNESCK ISSEILTAGD RKLLKVELLK EETTLVSWKK LMDEASKENG GLFVSAPERL LNANPNLEFR LAPGAQTENE MVNQPHPNRL 101: NSVIAKIERL YMGKDGSDGE ELDGAPDDDD YDTEDSFIDD AELDEYFEVD NSPIKHDGFF VNRGKLERIE PSATSNQQQP KKRRRKESAK PCGDVVDVSR 201: KRAKMAKTAG GKDQSASPGP SSKKISNDSK TVQDSFSPLK AQNGNDSLVL ENVKHTDKAN HQPMNATSPK SKAAGSSGPL HPKCSSKSVH EQSNSPPGKS 301: RPNVSAKSAV VRQQVNNGMP DLDIATESKT SIQISKKSGS NGRPKYSTLE KAIRNLEKLV AESRPPAATE NQDADISSQA VKRGLPGDVK LHLAKVARIA 401: YASQGEISGE LINRLMGIVG HLIQIRSLKR NLKIMIDSIV TANREKDTRF QRIKSEITEM LKTQVPLVES QETNQEAGTS DDFQDVGSLG KSPVKKFVMD 501: VALEEKLCDL YDVFVEGMDE HSGSQIRKLY SDLAQLWPNS LVDNHEIRRA ICREKERRRA LEGNIGKEMD QTKITKKKQT QLVPKSEGIT YPDKTSGVEV 601: KASVVLTATT TSLVDCQPAA DSSFERSKQQ HEKLKRTSSL SNPAAEGKKV RRKTEPALEE THLPAEKPLV LALKRQTHLK SKTHKQVQVH PQSKAHKQAQ 701: VHPKAKTQTP PDLNLPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)