AT2G06040.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:2352333..2355419 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84667.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||
| Length | 762 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTILRSREIP SVSPKPLPKE SDTEPSTPAR TLEPELHRSP DETAPELGLV DEPTHTTRRR SLRLAHQFDG DDCVTEKEVS VDEKFLSLRS GKRVAKRGVD 101: YGIEIESSKF DFDLKLGESA SKTKRVCVDL VEETIVKNES EDSVDLEDKS SSGVLGDSLA EKWYVVEVEN ESNNKGKGIM EDSYGESDVI CGQSYEKQSS 201: SMGRRRYTRE EKGKGIMQVE DVSSPVTVEI VEVDEEEMEI ESLVNSEKPP DVSVTELAAT MANVEQAQNR ENSNEIGNDS RTQHFRDIAE RIAHRFAHFD 301: AQVEEEEDLS DKEGEQQVED WPGPFSTAMK IIKDREEYTT PHVGIGVSNK ERSSPTIWVP RSNFSFPPRK APSLQELSLR VLVKNADAIT SLDYVPDTLR 401: VKLCQLLCDS RRMDLHFLDL LVQGSPTEIC VPDCSWLTEE EFTECFKNCD TSNLMVLQLD QCGRCMPDYI LPFTLARSPK VLPMLSTLSI SGACRLSDVG 501: LRQLVSSAPA ITSINLNQCS LLTSSSIDML SDSLGSVLRE LYINECQNID MKHILAALKK FEKLEVLSLA DLPSVKGRFL KEFVTARGQT LKQLILTNSR 601: KLSDSSIKVI SENCPNLSVL DLANVCKLTD SSLGYLANGC QALEKLIFCR NPFSDEAVAA FVETAGGSLK ELSLNNVKKV GHNTALALAK HSDKLQILDI 701: SWCREMSNDL LGYIVDNSSS LKVLKVFGCS QVTDVFVKGH SNPNVKILGV KMDPFLGHLS DN |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)