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AT2G28450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (CCCH-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, RNA methyltransferase activity, nucleic acid binding; INVOLVED IN: acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), (Uracil-5)-methyltransferase (InterPro:IPR010280); BEST Arabidopsis thaliana protein match is: RNA methyltransferase family protein (TAIR:AT3G21300.1); Has 8231 Blast hits to 7095 proteins in 1964 species: Archae - 111; Bacteria - 7000; Metazoa - 343; Fungi - 116; Plants - 121; Viruses - 4; Other Eukaryotes - 536 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-529-MONOMERBioCyc:ARA:GQT-531-MONOMERBioGrid:2743EC:2.1.1.-
eggNOG:COG2265eggNOG:KOG1677eggNOG:KOG2187EMBL:AC006283
EMBL:AY128289EMBL:BT002293EMBL:CP002685EnsemblPlants:AT2G28450
EnsemblPlants:AT2G28450.1entrez:817393ExpressionAtlas:Q8L7S3Gene3D:3.30.70.330
Gene3D:3.40.50.150Gene3D:4.10.1000.10GeneID:817393Genevisible:Q8L7S3
GO:GO:0000166GO:GO:0003677GO:GO:0006396GO:GO:0008173
GO:GO:0046872hmmpanther:PTHR11061hmmpanther:PTHR11061:SF24HOGENOM:HOG000030531
InParanoid:Q8L7S3IntAct:Q8L7S3InterPro:IPR000571InterPro:IPR010280
InterPro:IPR012677InterPro:IPR025714InterPro:IPR029063InterPro:IPR030390
ncoils:CoilOMA:WRTMSSAPaxDb:Q8L7S3Pfam:PF00642
Pfam:PF05958Pfam:PF13847Pfam:Q8L7S3Pfscan:PS50103
Pfscan:PS51687PhylomeDB:Q8L7S3PIR:A84685PRIDE:Q8L7S3
PRO:PR:Q8L7S3PROSITE:PS50103PROSITE:PS51687ProteinModelPortal:Q8L7S3
Proteomes:UP000006548RefSeq:NP_180412.2scanprosite:PS01230SMART:SM00356
SMR:Q8L7S3STRING:3702.AT2G28450.1SUPFAM:SSF53335SUPFAM:SSF54928
SUPFAM:SSF90229TAIR:AT2G28450UniGene:At.44990UniGene:At.66390
UniProt:Q8L7S3
Coordinates (TAIR10) chr2:-:12162180..12165761
Molecular Weight (calculated) 89027.30 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.45
Length 809 amino acids
Sequence (TAIR10)
(BLAST)
001: METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC
101: KYAHGEAELR MKPDNTWDPT SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVDLSL SKCLVHLPNK WQSDELKKFL GEQGVLYKSA
201: KKRRGMIVGF VTFENAEQLQ SGVEILDGKT VNSSNLKIAD VLPRTFDKND ARKSVKSARD AVTPLAYLSY ADQLEQKKTS IGQMLKKLAR NARKACPNGN
301: SLPQWVLTSR DRGGLACNLE GIIESPITNG YRNKCEFSVG LSLQGKPTVG FSLGSFCAGV TAVEEPVDCP NVSKIASQYA SIFQKFIENS KFQVWNRFQH
401: SGFWRQLTVR EGRKPGVFSN DEDAITRIAE VMLMVQVCLT GSDEAEVATE FEELAKAFAE GARASSPTLP LTVLVVQNHS GISNVAPPDA PLQVLAIPIS
501: DNGTDQEQTT NVLTEARIHD HINNLRFSIS PTAFFQVNTV TAEKLYSIAG DWADLGPDTL LFDVCCGTGT IGLTLAHRVG MVIGIEMNAS AVADAERNAT
601: INGISNCKFI CSKAEDVMSS LLKQYLDVTQ MEEAKPLSNA NDDLNKQIPS TEEMTNSEHV ADQNLPPSNT QVEELQDNEQ KDSSSLEPEK TTKPQFKNVV
701: AIVDPPRSGL HPAVIKALRT HPRLKRLVYI SCNPETLVAN AIELCTPSFD EPDRGNKNYR GRKKIGIAAL ARHRAKSMPT SEAFRPVKAM AVDLFPHTDH
801: CEMVMLLER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)