suba logo
AT3G56570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SET domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: RuBisCO-cytochrome methylase, RMS1 (InterPro:IPR011383); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 25210 Blast hits to 12491 proteins in 636 species: Archae - 52; Bacteria - 1284; Metazoa - 10981; Fungi - 2786; Plants - 1267; Viruses - 743; Other Eukaryotes - 8097 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y7DReggNOG:KOG1337EMBL:AL163972EMBL:CP002686
EnsemblPlants:AT3G56570EnsemblPlants:AT3G56570.1entrez:824824Gene3D:3.90.1420.10
GeneID:824824GO:GO:0016279GO:GO:0018026Gramene:AT3G56570.1
hmmpanther:PTHR13271hmmpanther:PTHR13271:SF30HOGENOM:HOG000238533InterPro:IPR001214
InterPro:IPR011383InterPro:IPR015353KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-
KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-KEGG:00360+2.1.1.-
KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-KEGG:00624+2.1.1.-
KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-KEGG:00940+2.1.1.-KEGG:00941+2.1.1.-
KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-KEGG:00981+2.1.1.-
KEGG:ath:AT3G56570ncoils:CoilOMA:NSEYFEIPfam:PF00856
PhylomeDB:Q9LXY3PIR:T49058PIRSF:PIRSF011771PRO:PR:Q9LXY3
Proteomes:UP000006548RefSeq:NP_191216.1SMR:Q9LXY3STRING:3702.AT3G56570.1
SUPFAM:SSF82199TAIR:AT3G56570UniGene:At.53954UniProt:Q9LXY3
Coordinates (TAIR10) chr3:+:20958660..20961137
Molecular Weight (calculated) 59454.80 Da
IEP (calculated) 4.16
GRAVY (calculated) -0.56
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRRLRAFK RWMQANGVDC SEALNLVDDE NDGVSVRAFC DLKEGDVVAN ISKTACLTIK TSGAREMIES ADLDGSLGLS VALMYERSLG EESPWAGYLQ
101: ILPIQEDLPL VWSLEDLDSL LSGTELHKLV KEDHVLIYED WKENILPLTS SLPQNVDSDS FGIKEYLAAK SLIASRSFEI DDYHGSGMVP LADLFNHKTG
201: AEDVHFTHES DSEADESDND DAANETTDED EPSSKISSSP EQSFEEVPGE NTDDEAKEEE EEEEEEEEGE EEEEGEEEEE NSSMLQNDQS GLKMIMVKDV
301: SAGAEVFNTY GLMGNAALLH RYGFTELDNP YDIVNIDLEL VTEWSTSSFT SRYTRARLAL WRKLGYTGCE SQNSEYFEVS STGEPQTELL ILLYILLLPD
401: DTYNKLDLAE STTGASPSKE GKRSSSYEIT IGKHKFVYGE SGNDILLTDG VCEALLTIVD KRESLYGSLS SLEDDIVRVK TCCLPRDRRL YHSLVLRVSE
501: RKILKKLRSY IHTQTNESSS GKRRKKMVPK S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)