AT1G04990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 244; Plants - 789; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1419368..1421454 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44706.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||
| Length | 404 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTPMSDTQH VQSSLVSIRS SDKIEDAFRK MKVNETGVEE LNPYPDRPGE RDCQFYLRTG LCGYGSSCRY NHPTHLPQDV AYYKEELPER IGQPDCEYFL 101: KTGACKYGPT CKYHHPKDRN GAQPVMFNVI GLPMRLGEKP CPYYLRTGTC RFGVACKFHH PQPDNGHSTA YGMSSFPAAD LRYASGLTMM STYGTLPRPQ 201: VPQSYVPILV SPSQGFLPPQ GWAPYMAASN SMYNVKNQPY YSGSSASMAM AVALNRGLSE SSDQPECRFF MNTGTCKYGD DCKYSHPGVR ISQPPPSLIN 301: PFVLPARPGQ PACGNFRSYG FCKFGPNCKF DHPMLPYPGL TMATSLPTPF ASPVTTHQRI SPTPNRSDSK SLSNGKPDVK KESSETEKPD NGEVQDLSED 401: ASSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)