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AT3G49390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 10
Curator
Summary (TAIR10)
RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins.
Computational
Description (TAIR10)
CTC-interacting domain 10 (CID10); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1); Has 1677 Blast hits to 1486 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 214; Plants - 535; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC012329EMBL:AK228892
EMBL:AK317338EMBL:AL132956EMBL:CP002686EnsemblPlants:AT3G49390
EnsemblPlants:AT3G49390.1EnsemblPlants:AT3G49390.2entrez:824101Gene3D:3.30.70.330
GeneID:824101Genevisible:Q9SG10GO:GO:0000166GO:GO:0003723
GO:GO:0005634Gramene:AT3G49390.1Gramene:AT3G49390.2hmmpanther:PTHR24012
HOGENOM:HOG000006309InParanoid:Q9SG10InterPro:IPR000504InterPro:IPR009818
InterPro:IPR012677iPTMnet:Q9SG10KEGG:ath:AT3G49390OMA:ERDNNGE
PaxDb:Q9SG10Pfam:PF00076Pfam:PF07145Pfam:PF14259
Pfam:Q9SG10Pfscan:PS50102PhylomeDB:Q9SG10PIR:T45844
PRIDE:Q9SG10PRO:PR:Q9SG10PROSITE:PS50102ProteinModelPortal:Q9SG10
Proteomes:UP000006548RefSeq:NP_001030833.1RefSeq:NP_190508.1SMART:SM00360
SMR:Q9SG10STRING:3702.AT3G49390.1SUPFAM:SSF54928TAIR:AT3G49390
tair10-symbols:CID10UniGene:At.738UniProt:Q9SG10
Coordinates (TAIR10) chr3:-:18314901..18317658
Molecular Weight (calculated) 38739.70 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.45
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVAENAGVK VDSSGQNLDN NNTAASATET TKPPCPDDDQ SPKSDSSTPL TIDSTPETDD RINETAQKVQ TLNGFSGNGE RDNNGEIKDL ADAFSKLNPM
101: AQEFVPPSLA RSQSGVLRNG LGFTNNFAAP PKLADGNDHF PRRRRSFGQG KRRMNKRTSL AQKDDVIRRT VYVSDIDQQV TEENLAGVFI NCGQVVDCRV
201: CGDPNSVLRF AFIEFTNEEG ARAALSMSGT VLGFYPLKVL PSKTAIAPVN PTFLPRSEDE REMCVRTVYC TNIDKRITQI DLKGFFEMLC GEVHRLRLGD
301: YHHQTRIAFV EFAMAESAIA ALHCSGIVLG ALPIRVSPSK TPVRPHFPRA EFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)