AT1G18600.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : RHOMBOID-like protein 12 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Mitochondrion-located rhomboid-like protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
RHOMBOID-like protein 12 (RBL12); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 3270 Blast hits to 3270 proteins in 960 species: Archae - 107; Bacteria - 1998; Metazoa - 110; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 865 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:6400647..6402587 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37442.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 11.82 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 336 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKAIFNRRVV VDSSSRLTKL LANPTTHSHL NRQTFTSLYK PNQSRHFRTH YLPSSPSSPP VSRFDPSQLW RSEKIRGFFA SALGNKAVKL GNLVESRVGF 101: IGSQFPKKGF EFQRFSGFQR RGWKHWLQGL SDRDVVLGLV IANAGVFVMW RVFNQQFMMN NFMISLDNFK SGRLHTLITS AFSHIDIGHI VSNMIGLYFF 201: GTSIARNFGP QFLLKLYLAG ALGGSVFYLI HHAYMAATSP KGQGAFVRDP SRTPGLGASG AVNAIMLLDI FLHPRATLYL EFFIPVPAML LGIFLIGKDI 301: LRITEGNSNI SGSAHLGGAA VAAIAWARIR KGRFRF |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)