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AT1G18600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RHOMBOID-like protein 12
Curator
Summary (TAIR10)
Mitochondrion-located rhomboid-like protein
Computational
Description (TAIR10)
RHOMBOID-like protein 12 (RBL12); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 3270 Blast hits to 3270 proteins in 960 species: Archae - 107; Bacteria - 1998; Metazoa - 110; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 865 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0705eggNOG:KOG2980EMBL:AC026238
EMBL:AF370504EMBL:AY081685EMBL:AY086276EMBL:CP002684
EnsemblPlants:AT1G18600EnsemblPlants:AT1G18600.1entrez:838441Gene3D:1.20.1540.10
GeneID:838441Genevisible:Q9FZ81GO:GO:0004252GO:GO:0005739
GO:GO:0016021GO:GO:0016485GO:GO:0031966Gramene:AT1G18600.1
hmmpanther:PTHR22936hmmpanther:PTHR22936:SF17HOGENOM:HOG000064690InParanoid:Q9FZ81
InterPro:IPR002610InterPro:IPR022764KEGG:ath:AT1G18600MEROPS:S54.A07
OMA:HIDIGHIPANTHER:PTHR22936PaxDb:Q9FZ81Pfam:PF01694
PhylomeDB:Q9FZ81PIR:F86319PRIDE:Q9FZ81PRO:PR:Q9FZ81
ProteinModelPortal:Q9FZ81Proteomes:UP000006548RefSeq:NP_564058.1STRING:3702.AT1G18600.1
SUPFAM:SSF144091TAIR:AT1G18600tair10-symbols:ATRBL12tair10-symbols:RBL12
TMHMM:TMhelixUniGene:At.23332UniProt:Q9FZ81
Coordinates (TAIR10) chr1:+:6400647..6402587
Molecular Weight (calculated) 37442.70 Da
IEP (calculated) 11.82
GRAVY (calculated) 0.09
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAIFNRRVV VDSSSRLTKL LANPTTHSHL NRQTFTSLYK PNQSRHFRTH YLPSSPSSPP VSRFDPSQLW RSEKIRGFFA SALGNKAVKL GNLVESRVGF
101: IGSQFPKKGF EFQRFSGFQR RGWKHWLQGL SDRDVVLGLV IANAGVFVMW RVFNQQFMMN NFMISLDNFK SGRLHTLITS AFSHIDIGHI VSNMIGLYFF
201: GTSIARNFGP QFLLKLYLAG ALGGSVFYLI HHAYMAATSP KGQGAFVRDP SRTPGLGASG AVNAIMLLDI FLHPRATLYL EFFIPVPAML LGIFLIGKDI
301: LRITEGNSNI SGSAHLGGAA VAAIAWARIR KGRFRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)