AT2G15290.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : translocon at inner membrane of chloroplasts 21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
translocon at inner membrane of chloroplasts 21 (TIC21); FUNCTIONS IN: copper uptake transmembrane transporter activity, protein homodimerization activity, iron ion transmembrane transporter activity; INVOLVED IN: protein import into chloroplast stroma, cellular metal ion homeostasis; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3611 (InterPro:IPR022051); Has 312 Blast hits to 312 proteins in 84 species: Archae - 0; Bacteria - 154; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:6642512..6644011 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31278.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.81 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MQSLLLPPAS SSGVSAVALR PGFQHSFNHQ SLSTRSLPLF NPLLLAPKKK TTISSYQSPP SLSVYGFQIG GSKPSFTPST VAFSYPTSPS SVPGDNEVDK 101: AKLAQVAKRL EKTSRYFKRL GSIGFWGQLV STVVAAVILS FSIVVTGKPT SPATFYATAS GIAAAFVSVF WSFGYIRLSE RLRRTSIDPA KAPPRADVVK 201: GLRSGIMVNI LGMGSALLGM QATVGFLVAK ALTTSANPFY QGVSQGYSPV LALDVFLVQA SANTLLSHFL GLVCSLELLR SVTVPNSESV VVPKVA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)