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AT1G78620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function DUF92, transmembrane
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Protein Annotations
EC:2.7.4.-eggNOG:COG1836eggNOG:ENOG410IEZHEMBL:AC007260
EMBL:AY035002EMBL:AY063010EMBL:AY087104EMBL:CP002684
EnsemblPlants:AT1G78620EnsemblPlants:AT1G78620.1entrez:844198ExpressionAtlas:Q9SYM0
GeneID:844198GO:GO:0009507GO:GO:0016021GO:GO:0016740
hmmpanther:PTHR13353hmmpanther:PTHR13353:SF7HOGENOM:HOG000232710InterPro:IPR002794
KEGG:ath:AT1G78620PANTHER:PTHR13353PaxDb:Q8LBN5PaxDb:Q9SYM0
Pfam:PF01940PhylomeDB:Q9SYM0PIR:H96814ProteinModelPortal:Q9SYM0
Proteomes:UP000006548RefSeq:NP_565184.1STRING:3702.AT1G78620.2TAIR:AT1G78620
TMHMM:TMhelixUniGene:At.19165UniPathway:UPA00160UniProt:Q9SYM0
Coordinates (TAIR10) chr1:-:29573862..29575758
Molecular Weight (calculated) 34876.40 Da
IEP (calculated) 10.37
GRAVY (calculated) 0.41
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MATISSTLLL NSSRSALPLR FPKFSGFSSS SPFARSYRFG RRNLEPLSNG MLSSGSRADG ATAAAASMEG VMTEAMKLIQ SASPTWKSAV ANNLLIFVLG
101: SPLLVTGLSA SGIAAAFLLG TLTWRAYGSA GFLLVAAYFV IGTAATKVKM TQKEAQGVAE KRKGRRGPRS VIGSSAAGCV CAFLSIYQVG GAAFSQLFRL
201: GFVSSFCTKV SDTVSSEIGK AYGKTTYLAT TFKIVPRGTE GAMSLEGTLA GLLASFFLAS VGCFLGQITP PEAAVCVLAS QIANLGESII GASFQDKEGF
301: KWLNNDVVNV INISLGSIVA ILMQQFILQN WVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)