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AT1G50170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sirohydrochlorin ferrochelatase B
Curator
Summary (TAIR10)
encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis
Computational
Description (TAIR10)
sirohydrochlorin ferrochelatase B (SIRB); FUNCTIONS IN: sirohydrochlorin ferrochelatase activity; INVOLVED IN: response to oxidative stress, siroheme biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CbiX (InterPro:IPR002762); Has 1927 Blast hits to 1707 proteins in 620 species: Archae - 186; Bacteria - 1447; Metazoa - 1; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).
Protein Annotations
EC:4.99.1.4eggNOG:COG2138eggNOG:ENOG410IW0DEMBL:AC007980
EMBL:AY088838EMBL:BT004060EMBL:BT005145EMBL:CP002684
EnsemblPlants:AT1G50170EnsemblPlants:AT1G50170.1entrez:841439GeneID:841439
GO:GO:0006979GO:GO:0009236GO:GO:0009507GO:GO:0016852
GO:GO:0019354GO:GO:0046872GO:GO:0051266GO:GO:0051539
Gramene:AT1G50170.1gramene_pathway:4.99.1.4gramene_pathway:PWY-5194hmmpanther:PTHR33542
HOGENOM:HOG000147058IntAct:Q84JH7InterPro:IPR002762KEGG:00860+4.99.1.3
KEGG:ath:AT1G50170OMA:SSCQITRPaxDb:Q84JH7Pfam:PF01903
PhylomeDB:Q84JH7PIR:A96538ProteinModelPortal:Q84JH7Proteomes:UP000006548
RefSeq:NP_564562.1STRING:3702.AT1G50170.1SUPFAM:SSF53800TAIR:AT1G50170
tair10-symbols:ATSIRBtair10-symbols:SIRBUniGene:At.38080unipathway:UPA00148
UniPathway:UPA00262UniProt:Q84JH7
Coordinates (TAIR10) chr1:+:18582087..18583514
Molecular Weight (calculated) 24926.80 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.27
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTQSQFLVN LSYGGLASQS NLRANNRVSP SSCQITRTNR SWALPVSFKV EKFQLQRGRR RRGSPCFGES EGLVKNGIGD ADGIIIVDHG SRRRESNLML
101: EEFVKMFKEK TGYPIVEPAH MELAEPSIKD AFSLCVQQGA KRVVVSPFFL FPGRHWHTDI PSLTADAAKE FSGISYLITA PLGPHNLLLD VVNDRIQHCL
201: SHVEGDADEC LVCAGTNKCK LYNSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)