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AT1G08530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWEGeggNOG:ENOG4111XFJEMBL:AK229523EMBL:CP002684
EnsemblPlants:AT1G08530EnsemblPlants:AT1G08530.1entrez:837375GeneID:837375
GO:GO:0009536GO:GO:0009941GO:GO:0016021Gramene:AT1G08530.1
hmmpanther:PTHR33825hmmpanther:PTHR33825:SF5KEGG:ath:AT1G08530OMA:HSINPLA
PhylomeDB:Q0WNC2Proteomes:UP000006548RefSeq:NP_172329.2STRING:3702.AT1G08530.1
TAIR:AT1G08530TMHMM:TMhelixUniGene:At.28799UniProt:Q0WNC2
Coordinates (TAIR10) chr1:+:2701252..2702952
Molecular Weight (calculated) 27016.70 Da
IEP (calculated) 8.07
GRAVY (calculated) 0.19
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSLCFISTA PLIRSPPFLD LSPTSLNRFT LKIPASLYVS HPTRCSISNP SSSEELLNSN GGMSRASISV FGGTSLNNLK MQVGSPISLH SINPLAKLSL
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)