AT2G35410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G09040.1); Has 25515 Blast hits to 17648 proteins in 833 species: Archae - 12; Bacteria - 2210; Metazoa - 12015; Fungi - 3602; Plants - 4930; Viruses - 0; Other Eukaryotes - 2746 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14898341..14899590 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33787.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 308 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVLEASLSI FSFSSSSSSS KPYLFSKRSS SLKLTALSLR IPSNLSPVFS LRSGSDNSRR LVSVLCSVAE KETSADEETS QEEKTEETQN SNLKRKLFVF 101: NLPWSMSVND ISELFGQCGT VNNVEIIRQK DGKNRGFAFV TMASGEEAQA AIDKFDTFQV SGRIISVSFA RRFKKPTPKS PNDLPSPAPG DTRHKLYVSN 201: LAWKARSTHL RELFTAADFN PVSARVVFAD PEGRSSGYGF VSFATREEAE NAITKLNGKE IMGRPITLKF SLRSASESED GDSVEANNAS EDGDTVEDKN 301: TSEENIVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)