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AT2G36360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1); Has 9801 Blast hits to 4098 proteins in 334 species: Archae - 8; Bacteria - 328; Metazoa - 3175; Fungi - 1216; Plants - 2882; Viruses - 0; Other Eukaryotes - 2192 (source: NCBI BLink).
Protein Annotations
DNASU:818209eggNOG:ENOG410Y5WMeggNOG:KOG0379EMBL:AK317016
EMBL:AY093023EMBL:AY128929EMBL:CP002685EnsemblPlants:AT2G36360
EnsemblPlants:AT2G36360.1EnsemblPlants:AT2G36360.2entrez:818209ExpressionAtlas:Q8RWL1
Gene3D:2.120.10.80GeneID:818209Gramene:AT2G36360.1Gramene:AT2G36360.2
hmmpanther:PTHR23244hmmpanther:PTHR23244:SF262HOGENOM:HOG000083524InterPro:IPR006652
InterPro:IPR015915KEGG:ath:AT2G36360Pfam:PF13415Pfam:PF13418
PhylomeDB:Q8RWL1Proteomes:UP000006548RefSeq:NP_001031493.1RefSeq:NP_850263.1
SMART:SM00612SMR:Q8RWL1STRING:3702.AT2G36360.5SUPFAM:0052715
TAIR:AT2G36360UniGene:At.43496UniGene:At.64442UniProt:Q8RWL1
Coordinates (TAIR10) chr2:-:15243461..15247523
Molecular Weight (calculated) 55043.70 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.26
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MHHWVQASSS DFSGTPPQAR SGHTAVNVGK SMVVVFGGLV DKKFLSDIIV YDIENKLWFE PECTGSESEG QVGPTPRAFH VAITIDCHMF IFGGRSGGKR
101: LGDFWVLDTD IWQWSELTSF GDLPTPRDFA AAAAIGSQKI VLCGGWDGKK WLSDVYVMDT MSLEWLELSV SGSLPPPRCG HTATMVEKRL LVFGGRGGGG
201: PIMGDLWALK GLIDEERETP GWTQLKLPGQ APSSRCGHTV TSGGHYLLLF GGHGTGGWLS RYDVYYNDTI ILDRVTAQWK RLPIGNEPPP PRAYHTMTCI
301: GARHLLIGGF DGKLTFGDLW WLVPEDDPIA KRSSVPQVVN PPEIKESERE LDKERGQDGF SIVDLQQKMG ISVSSGLRLQ IPEESEDQEF VELGTRLIEG
401: DVVDERASMI QMAAQALRQH WKQSTPRTLQ LKELGSLLRD YQRLVTRIFT TQSSLTSADF GLPGTKTFTF YHIKSSSELR INDISKLLEE YKTLVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)