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AT3G59090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK58eggNOG:ENOG4111T9SEMBL:AK316959EMBL:CP002686
EnsemblPlants:AT3G59090EnsemblPlants:AT3G59090.1entrez:825078ExpressionAtlas:B9DFZ1
GeneID:825078GO:GO:0016021Gramene:AT3G59090.1hmmpanther:PTHR31142
hmmpanther:PTHR31142:SF4InterPro:IPR009457Pfam:PF06454PhylomeDB:B9DFZ1
Proteomes:UP000006548RefSeq:NP_850719.1STRING:3702.AT3G59090.2TAIR:AT3G59090
TMHMM:TMhelixUniGene:At.5026UniProt:B9DFZ1
Coordinates (TAIR10) chr3:+:21839334..21842348
Molecular Weight (calculated) 41119.50 Da
IEP (calculated) 9.52
GRAVY (calculated) 0.37
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MKILATLFES TKDKCYAPSF IAVNLCLAFI DAALAFIAFL QLSRFHRRNK QVGWTRQKVL HLMIASSNTG SVIYFVAAVI ATCTRWHHWS NALGFLLMAF
101: PKILFLATFL LLLSFWVDVC HQGNGEEDDD DDEENSIQQV LLEKSKSKPG SSNASDRRKC CSFHGIHVGT RQKFVVAAII LVFILMISFA ILIWIASGKN
201: PMNSSLLAEV YVDIFAAIIL ITGGGICFYG LRLLFNLRKV RSEQVSSEMR KVSGLAGVSV VCFTVSSLIA LLTHIPLFYH WNPSKLHGIK ALVLLIIYYF
301: IGSTVPLAFV LWVLRELPPQ NIVSRQEDTR RITYVNYETV PRQPQGPQQD WASATVSKNQ VSKASPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)