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AT4G22756.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.627
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sterol C4-methyl oxidase 1-2
Curator
Summary (TAIR10)
Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.
Computational
Description (TAIR10)
sterol C4-methyl oxidase 1-2 (SMO1-2); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase activity, catalytic activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol-4alpha-methyl oxidase 1-1 (TAIR:AT4G12110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G22756-MONOMERBioGrid:13663BRENDA:1.14.13.72EC:1.14.13.72
eggNOG:COG3000eggNOG:KOG0873EMBL:AK229338EMBL:AL021635
EMBL:AY035393EMBL:AY087876EMBL:BT025865EMBL:CP002687
EnsemblPlants:AT4G22756EnsemblPlants:AT4G22756.1entrez:828374GeneID:828374
Genevisible:Q1EC69GO:GO:0000254GO:GO:0005506GO:GO:0005789
GO:GO:0006633GO:GO:0016021GO:GO:0016126GO:GO:0080064
Gramene:AT4G22756.1gramene_pathway:1.14.13.72gramene_pathway:PWY66-341hmmpanther:PTHR11863
hmmpanther:PTHR11863:SF44HOGENOM:HOG000162289InParanoid:Q1EC69InterPro:IPR006694
KEGG:ath:AT4G22756KO:K14423OMA:NTSADYWPaxDb:Q1EC69
Pfam:PF04116Pfam:Q1EC69PhylomeDB:Q1EC69PRIDE:Q1EC69
PRO:PR:Q1EC69Proteomes:UP000006548Reactome:R-ATH-192105RefSeq:NP_567670.1
STRING:3702.AT4G22756.1TAIR:AT4G22756tair10-symbols:ATSMO1tair10-symbols:ATSMO1-2
tair10-symbols:SMO1tair10-symbols:SMO1-2TMHMM:TMhelixUniGene:At.32502
UniProt:Q1EC69
Coordinates (TAIR10) chr4:-:11955124..11956695
Molecular Weight (calculated) 34991.30 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.01
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPYATIEEA SIALSRNLTW LETLWFDYSA TKSDYYLYCH NILFLFLIFS LVPLPLVFIE SSQSTSDLFN RYKIQPKVKN SFSSMFKCYK DVMKMFILVV
101: GPLQLVSYPS IQMIEIRSGL PLPSCMEIVA QLVVYFLVED YTNYWVHRFF HCKWGYEKFH HIHHEYTAPI GYAAPYAHWA EVLLLGIPTF LGPAIAPGHM
201: ITFWLWIALR QIEAIETHSG YDFPWSLTKY IPFYGGAEYH DYHHYVGGQS QSNFASVFTY CDYIYGTDKG YRFQKKLLQQ MKEKSKKSNK LVNGGEKFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)