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AT2G35780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 26 (scpl26); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 27 (TAIR:AT3G07990.1); Has 3733 Blast hits to 3660 proteins in 399 species: Archae - 0; Bacteria - 269; Metazoa - 644; Fungi - 857; Plants - 1549; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G35780-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC006068EMBL:AC007017EMBL:AY088044EMBL:BT029178
EMBL:CP002685EnsemblPlants:AT2G35780EnsemblPlants:AT2G35780.1entrez:818150
ESTHER:arath-SCP26Gene3D:3.40.50.1820GeneID:818150Genevisible:Q9ZQQ0
GO:GO:0004185GO:GO:0005576GO:GO:0005773GO:GO:0051603
Gramene:AT2G35780.1hmmpanther:PTHR11802hmmpanther:PTHR11802:SF71HOGENOM:HOG000198295
InParanoid:Q9ZQQ0InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058
InterPro:IPR033124KEGG:ath:AT2G35780KO:K16297MEROPS:S10.A43
OMA:LRITCEFPANTHER:PTHR11802PaxDb:Q9ZQQ0Pfam:PF00450
Pfam:Q9ZQQ0PhylomeDB:Q9ZQQ0PIR:H84772PRIDE:Q9ZQQ0
PRINTS:PR00724PRO:PR:Q9ZQQ0PROSITE:PS00131PROSITE:PS00560
ProteinModelPortal:Q9ZQQ0Proteomes:UP000006548RefSeq:NP_181121.1scanprosite:PS00131
scanprosite:PS00560SMR:Q9ZQQ0STRING:3702.AT2G35780.1SUPFAM:SSF53474
TAIR:AT2G35780tair10-symbols:scpl26UniGene:At.27611UniProt:Q9ZQQ0
Coordinates (TAIR10) chr2:-:15037733..15040104
Molecular Weight (calculated) 51524.00 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.27
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLLLLFFF FLILLHYASC SRHEQEKDRI FHLPGEPNDV SFSHFSGYIT VNESAGRALF YWLTESPPSE NPESKPLVLW LNGGPGCSSV AYGAAEEIGP
101: FRINPDGKTL YHNPYSWNKL ANLLFLESPA GVGFSYSNTT SDLYTAGDQR TAEDAYVFLV KWFERFPQYK HREFYIAGES YAGHYVPQLS QIVYEKRNPA
201: INFKGFIVGN AVIDDYHDYV GLFEYWWAHG LISDLTYHNL RITCEFGSSE HPSSKCTKAM EAADLEQGNI DPYSIYTVTC KKEAAALRSR FSRVRHPWMW
301: RAYDPCTEKY SGMYFNSPEV QKAMHANITG LAYPWKGCSD IVGEKWADSP LSMLPIYKEL IAAGLRIWVF SGDTDSVVPI TGTRYSIRAL KLQPLSKWYP
401: WNDDGQVGGW SQVYKGLTLV TIHGAGHEVP LFRPRRAFLL FQSFLDNKPL PM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)