AT5G10560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT1G78060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3336335..3339351 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87189.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 792 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLQLTLISL LFFTSAIAET FKNLDSHPQF PCKPPHFSSY PFCNVSLSIK QRAISLVSLL MLPEKIGQLS NTAASVPRLG IPPYEWWSES LHGLADNGPG 101: VSFNGSISAA TSFPQVIVSA ASFNRTLWYE IGSAVAVEGR AMYNGGQAGL TFWAPNINVF RDPRWGRGQE TPGEDPKVVS EYGVEFVRGF QEKKKRKVLK 201: RRFSDDVDDD RHDDDADGKL MLSACCKHFT AYDLEKWGNF TRYDFNAVVT EQDMEDTYQP PFETCIRDGK ASCLMCSYNA VNGVPACAQG DLLQKARVEW 301: GFEGYITSDC DAVATIFAYQ GYTKSPEEAV ADAIKAGVDI NCGTYMLRHT QSAIEQGKVS EELVDRALLN LFAVQLRLGL FDGDPRRGQY GKLGSNDICS 401: SDHRKLALEA TRQGIVLLKN DHKLLPLNKN HVSSLAIVGP MANNISNMGG TYTGKPCQRK TLFTELLEYV KKTSYASGCS DVSCDSDTGF GEAVAIAKGA 501: DFVIVVAGLD LSQETEDKDR VSLSLPGKQK DLVSHVAAVS KKPVILVLTG GGPVDVTFAK NDPRIGSIIW IGYPGETGGQ ALAEIIFGDF NPGGRLPTTW 601: YPESFTDVAM SDMHMRANSS RGYPGRTYRF YTGPQVYSFG TGLSYTKFEY KILSAPIRLS LSELLPQQSS HKKQLQHGEE LRYLQLDDVI VNSCESLRFN 701: VRVHVSNTGE IDGSHVVMLF SKMPPVLSGV PEKQLIGYDR VHVRSNEMME TVFVIDPCKQ LSVANDVGKR VIPLGSHVLF LGDLQHSLSV EF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)