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AT5G19670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G25820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:CP002688EMBL:KJ138679
EnsemblPlants:AT5G19670EnsemblPlants:AT5G19670.1entrez:832087GeneID:832087
GO:GO:0016740Gramene:AT5G19670.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF84
InterPro:IPR004263KEGG:ath:AT5G19670OMA:MPFSARMPfam:PF03016
Proteomes:UP000006548RefSeq:NP_197468.2STRING:3702.AT5G19670.1TAIR:AT5G19670
TMHMM:TMhelixUniGene:At.31266UniProt:F4K2K9
Coordinates (TAIR10) chr5:+:6647025..6649358
Molecular Weight (calculated) 70385.00 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.45
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVRSELRKQ SRSGKRKWAI LVGIVALTHI LLLLSYGDAL RYLLPDGRRL KLPNENNALL MTPSRNTLAV NVSEDSAVSG IHVLEKNGYV SGFGLRNESE
101: DDEGFVGNVD FESFEDVKDS IIIKEVAGSS DNLFPSETTV MQKESVSTSN NGYQVQNVTV QSQKNVKSSI LSGGSSIASP ASGNSSLLVS KKVSKKKKMR
201: CDLPPKSVTT IDEMNRILAR HRRTSRAMRP RWSSRRDEEI LTARKEIENA PVAKLERELY PPIFRNVSLF KRSYELMERI LKVYVYKEGN RPIFHTPILK
301: GLYASEGWFM KLMEGNKQYT VKDPRKAHLY YMPFSARMLE YTLYVRNSHN RTNLRQFLKE YTEHISSKYP FFNRTDGADH FLVACHDWAP YETRHHMEHC
401: IKALCNADVT AGFKIGRDIS LPETYVRAAK NPLRDLGGKP PSQRRTLAFY AGSMHGYLRQ ILLQHWKDKD PDMKIFGRMP FGVASKMNYI EQMKSSKYCI
501: CPKGYEVNSP RVVESIFYEC VPVIISDNFV PPFFEVLDWS AFSVIVAEKD IPRLKDILLS IPEDKYVKMQ MAVRKAQRHF LWHAKPEKYD LFHMVLHSIW
601: YNRVFQAKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)