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AT3G10440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Shugoshin C terminus
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Shugoshin C terminus; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; CONTAINS InterPro DOMAIN/s: Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: Shugoshin C terminus (TAIR:AT5G04320.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXCDeggNOG:ENOG411043HEMBL:CP002686EnsemblPlants:AT3G10440
EnsemblPlants:AT3G10440.1entrez:820208GeneID:820208GO:GO:0000775
GO:GO:0005634GO:GO:0034090Gramene:AT3G10440.1hmmpanther:PTHR34373
hmmpanther:PTHR34373:SF2InParanoid:F4J3S1InterPro:IPR011515KEGG:ath:AT3G10440
ncoils:CoilOMA:MNSAQRRPaxDb:F4J3S1Pfam:PF07557
PRIDE:F4J3S1ProteinModelPortal:F4J3S1Proteomes:UP000006548RefSeq:NP_187655.2
TAIR:AT3G10440UniGene:At.53249UniProt:F4J3S1
Coordinates (TAIR10) chr3:+:3245376..3248987
Molecular Weight (calculated) 63949.30 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.99
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRATVLNVG DHASEGVRTN KAKGEKMVLE PPMNSAQRRK LGDITNLQNQ KNLMNQGAKH QQQAILISSK ENAENLQKEN TKLMKVVMER DGIKSDLKKL
101: RIEFQKVQEQ NLLLAQANTR ILAEFNTSKD QLKVLQHELG CKNGLVMARK MLLKEQTLPC TRHASKVKAQ ANACGGACKT FQPNDADHEH ASGSSNANSL
201: QRNEKANSKR RVSGRKNPAN SEVLDIIGRS GETCQMEDNI DNKKLVSDSD NDAENHINDN VQSKRYCAGR QSSSSKTREA SQTETLQKVV DAKEIKGDAR
301: FSLTKHSDWL KSQEPEPSES LYESRFPLRR RSARLKSQEP EPSESFHDSI ETTKRRRSAI RSAMFNIQEL GVIQNLNGLP DDQEIAAKAR CSAREQSTGS
401: KPEAVEPHDT KEIIGKSRIS LRRQSARFNF QELGVTENLN GPHDDQTIAA NARCCASEQS IGSKPEAVEP HDIEERIGKI RVSSRRQSAN IETPRAIKEP
501: ANPPLHDDNV EESSQISCSV SMELKRESKK KPTGDESEEM RKTTVGRPSR QAAEKIKSYK EPSLKEKMRG GF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)