AT2G46180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : golgin candidate 4 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
golgin candidate 4 (GC4); BEST Arabidopsis thaliana protein match is: GRIP-related ARF-binding domain-containing protein 1 (TAIR:AT3G61570.1); Has 144775 Blast hits to 78736 proteins in 3164 species: Archae - 1753; Bacteria - 23936; Metazoa - 62600; Fungi - 12453; Plants - 7734; Viruses - 519; Other Eukaryotes - 35780 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18967482..18971260 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82871.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||||||||||||||
| Length | 725 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWSSVANLKE NLNKIAHDVH DDDEDDDEDL TIYGSTNGGT DRRNSNGFRY SRSPMANGFE SPVNPEIERY KAEINKLQKS ESEIKALSVN YAALLKEKED 101: QISRLNQENG SLKQNLTSTN AALKESRLDL SRASNNNAIK GNGDHSPNRS QRSPTNWKNR NQMNNGIASK PNGTENDSES HKKEKEFAEM LEERTRSMAS 201: AQARELEKER EKSANLQILL QEERKQNETF KEELQSLRLD KEKTLMESNK VRRELDAKLA EIRQLQMKLN GGEQHAFGIS RENLKEVNKA LEKENNELKL 301: KRSELEAALE ASQKSTSRKL FPKSTEDLSR HLSSLDEEKA GTFPGKEDME KSLQRLEKEL EEARREKDKA RQELKRLKQH LLEKETEESE KMDEDSRLID 401: ELRQTNEYQR SQILGLEKAL RQTMANQEEI KSSSDLEIRK SKGIIEDLNQ KLANCLRTID SKNVELLNLQ TALGQYYAEI EAKEHFEREL AVAKEDAMKL 501: SARLKDVDEQ LESSKKEKEE ITSKVLHAEN IAAEWKNRVS KVEDDNAKVR RVLEQSMTRL NRMSMDSDFL VDRRIVIKLL VTYFQRNHSR EVLDLMVRML 601: GFSEEEKQRI GLAQQGAAGK GVVRGVLGFP GRLVGGILGG GGGSPDSHPN MASDNQSFAD MWVEFLLKDA EERERREAED AANKEQEKAT VSSTQRPKYE 701: QSDSEFSTVP LTSSNSNHRL SRLLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)