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AT1G18190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : golgin candidate 2
Curator
Summary (TAIR10)
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508–668 aa) portion of the protein.
Computational
Description (TAIR10)
golgin candidate 2 (GC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: golgin candidate 1 (TAIR:AT2G19950.1); Has 50245 Blast hits to 32562 proteins in 2069 species: Archae - 503; Bacteria - 6561; Metazoa - 24889; Fungi - 4466; Plants - 2316; Viruses - 153; Other Eukaryotes - 11357 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHZ9eggNOG:ENOG4111R6UEMBL:AC034107EMBL:AC069551
EMBL:CP002684EMBL:EU249330EnsemblPlants:AT1G18190EnsemblPlants:AT1G18190.1
entrez:838398GeneID:838398Genevisible:B0F9L7GO:GO:0000139
GO:GO:0000301GO:GO:0005794GO:GO:0007030GO:GO:0016021
GO:GO:0031985Gramene:AT1G18190.1hmmpanther:PTHR13815hmmpanther:PTHR13815:SF6
HOGENOM:HOG000077714InParanoid:B0F9L7InterPro:IPR019177iPTMnet:B0F9L7
KEGG:ath:AT1G18190ncoils:CoilOMA:WVIYILMPaxDb:B0F9L7
Pfam:B0F9L7Pfam:PF09787PhylomeDB:B0F9L7PRIDE:B0F9L7
PRO:PR:B0F9L7ProteinModelPortal:B0F9L7Proteomes:UP000006548RefSeq:NP_173257.2
STRING:3702.AT1G18190.1TAIR:AT1G18190tair10-symbols:GC2TMHMM:TMhelix
UniGene:At.42983UniGene:At.51660UniProt:B0F9L7
Coordinates (TAIR10) chr1:-:6257963..6261325
Molecular Weight (calculated) 74791.30 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.94
Length 668 amino acids
Sequence (TAIR10)
(BLAST)
001: MANWISSKLK AAETILQQLD QQAADSLRKD EKSETHDEVF ETSPKSGSSP VSLKDQLRKK TYEGSDSGSG SQRNSTEQKP SYLSSSKKVR KPDQSHERTS
101: APSQSLTQDN TKLTDNDWTE LLSTPNQRTS TSTSRSPGGT SAIRGLKKDG KRHGNLGKNP LVSDGKKSSS SNVVNSRGRP QKQTNKEPSD KEVSSPSDAD
201: MKNRNAPRDI FVNSTHKESE KDVSGKTPPL DDSRRSANET LPRETSPSVG KRDGRESRRS SVWGKQVREE VSQSNVSDGL TRKESSLSSD ESESDYESDS
301: STDSERERQR EERRRRRERV FAEKVATKAV AVIKERENMV ARLEGEKLSL EKIVEERAKQ QAQEAAELQT NMMETLEAAD LEKQKHNNTR MEVLTRLAGL
401: EAENAELTRS LAAGQKKLET QIDQVAVLKQ QVELKESTLE ELKRNTFNIG GRGTTLKQLD TSRGDKFEHQ MLEAEISLLT DKIGRLQDKA TKLEADIEMM
501: RKELEEPTEV EIELKRRLNQ LTDHLIQKQS QVEALSSEKA TILFRIEAVS RLIEENKGMS ATEASSQDLE AGDWELSGSK FKPAFQDKIR SGKKHLGWLV
601: MQLNAIFISG TVFLRRNPTA KIWAVVYLVC LHLWVLYILL SHSDASSSGE LRSGAVISLE NFSNSSLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)