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AT1G05590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-hexosaminidase 2
Curator
Summary (TAIR10)
Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.
Computational
Description (TAIR10)
beta-hexosaminidase 2 (HEXO2); FUNCTIONS IN: UDP-glucosyltransferase activity, hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1); Has 3806 Blast hits to 3725 proteins in 709 species: Archae - 2; Bacteria - 2403; Metazoa - 477; Fungi - 234; Plants - 128; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05590-MONOMERBRENDA:3.2.1.52CAZy:GH20EC:3.2.1.52
eggNOG:COG3525eggNOG:KOG2499EMBL:AC007153EMBL:AK229119
EMBL:CP002684EnsemblPlants:AT1G05590EnsemblPlants:AT1G05590.1entrez:837064
Gene3D:3.20.20.80Gene3D:3.30.379.10GeneID:837064Genevisible:Q9SYK0
GO:GO:0004563GO:GO:0005886GO:GO:0005975GO:GO:0015929
GO:GO:0035251Gramene:AT1G05590.1hmmpanther:PTHR22600hmmpanther:PTHR22600:SF14
HOGENOM:HOG000157972InParanoid:Q9SYK0InterPro:IPR013781InterPro:IPR015883
InterPro:IPR017853InterPro:IPR025705InterPro:IPR029018InterPro:IPR029019
KEGG:00511+3.2.1.52KEGG:00513+3.2.1.52KEGG:00520+3.2.1.52KEGG:00531+3.2.1.52
KEGG:00603+3.2.1.52KEGG:00604+3.2.1.52KEGG:ath:AT1G05590KO:K12373
OMA:SWAEPHAPaxDb:Q9SYK0Pfam:PF00728Pfam:PF14845
Pfam:Q9SYK0PhylomeDB:Q9SYK0PIR:H86189PIRSF:PIRSF001093
PRIDE:Q9SYK0PRINTS:PR00738PRO:PR:Q9SYK0ProteinModelPortal:Q9SYK0
Proteomes:UP000006548Reactome:R-ATH-1660662Reactome:R-ATH-2022857Reactome:R-ATH-2024101
Reactome:R-ATH-2160916RefSeq:NP_172050.1SMR:Q9SYK0STRING:3702.AT1G05590.1
SUPFAM:SSF51445SUPFAM:SSF55545TAIR:AT1G05590tair10-symbols:ATHEX3
tair10-symbols:HEXO2TMHMM:TMhelixUniGene:At.42389UniProt:Q9SYK0
Coordinates (TAIR10) chr1:+:1669871..1671686
Molecular Weight (calculated) 64994.60 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.14
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTLSKFHVI LIPILFFITL LSPLFSIALP INIWPKPRFL SWPQHKAIAL SPNFTILAPE HQYLSASVTR YHNLIRSENY SPLISYPVKL MKRYTLRNLV
101: VTVTDFSLPL HHGVDESYKL SIPIGSFSAH LLAHSAWGAM RGLETFSQMI WGTSPDLCLP VGIYIQDSPL FGHRGVLLDT SRNYYGVDDI MRTIKAMSAN
201: KLNVFHWHIT DSQSFPLVLP SEPSLAAKGS LGPDMVYTPE DVSKIVQYGF EHGVRVLPEI DTPGHTGSWG EAYPEIVTCA NMFWWPAGKS WEERLASEPG
301: TGQLNPLSPK TYEVVKNVIQ DIVNQFPESF FHGGGDEVIP GCWKTDPAIN SFLSSGGTLS QLLEKYINST LPYIVSQNRT VVYWEDVLLD AQIKADPSVL
401: PKEHTILQTW NNGPENTKRI VAAGYRVIVS SSEFYYLDCG HGGFLGNDSI YDQKESGGGS WCAPFKTWQS IYNYDIADGL LNEEERKLVL GGEVALWSEQ
501: ADSTVLDSRL WPRASALAES LWSGNRDERG VKRCGEAVDR LNLWRYRMVK RGIGAEPIQP LWCLKNPGMC NTVHGALQDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)